Pre_GI: BLASTP Hits

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Query: NC_016822:1839739:1840312 Shigella sonnei 53G, complete genome

Start: 1840312, End: 1840539, Length: 228

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:1409086:142313514231351423368234Escherichia coli BW2952 chromosome, complete genome4-oxalocrotonate tautomerase2e-36150
NC_000913:1517051:153107615310761531309234Escherichia coli K12, complete genome4-oxalocrotonate tautomerase2e-36150
NC_010473:1607646:162167116216711621904234Escherichia coli str. K-12 substr. DH10B, complete genome4-oxalocrotonate tautomerase2e-36150
AC_000091:1521976:153476615347661534999234Escherichia coli W3110 DNA, complete genome4-oxalocrotonate tautomerase2e-36150
NC_010468:2406387:241041824104182410645228Escherichia coli ATCC 8739, complete genome4-oxalocrotonate tautomerase2e-36150
NC_011740:1494796:151301615130161513297282Escherichia fergusonii ATCC 35469, complete genome4-oxalocrotonate tautomerase6e-32135
NC_014500:2688095:269265126926512692881231Dickeya dadantii 3937 chromosome, complete genomeputative tautomerase ydcE3e-1684
NC_009255:1071868:109702010970201097247228Burkholderia vietnamiensis G4 chromosome 2, complete sequence4-oxalocrotonate tautomerase8e-0752.4
NC_010086:1907959:191643819164381916665228Burkholderia multivorans ATCC 17616 chromosome 2, complete4-oxalocrotonate tautomerase8e-0752.4
NC_010805:530876:558639558639558866228Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein8e-0752.4