Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1481071 Shigella sonnei 53G, complete genome

Start: 1481071, End: 1481817, Length: 747

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:2514544:252081925208192521565747Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeMltA-interacting MipA family protein3e-106384
NC_015566:2957956:296119029611902961954765Serratia sp. AS12 chromosome, complete genomeMltA-interacting MipA family protein8e-71266
NC_017047:2260118:228550922855092286258750Rahnella aquatilis HX2 chromosome, complete genomeMltA-interacting MipA family protein2e-64245
NC_015410:3093465:311066431106643111347684Pseudomonas mendocina NK-01 chromosome, complete genomeMltA-interacting protein3e-1479
NC_014532:2146466:214849121484912149315825Halomonas elongata DSM 2581, complete genomeK07274 outer membrane protein3e-1065.5
NC_008543:259450:268225268225269040816Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceMltA-interacting MipA family protein8e-1064.3
NC_007511:3080849:309296030929603093778819Burkholderia sp. 383 chromosome 2, complete sequenceouter membrane protein9e-1063.9
NC_014216:1197704:1219834121983412209431110Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeProtein of unknown function DUF21412e-0756.6
NC_016818:2927500:293026629302662931102837Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeouter membrane protein V9e-0650.8