Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1474449 Shigella sonnei 53G, complete genome

Start: 1474449, End: 1474901, Length: 453

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:3085000:3098344309834431016613318Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein7e-38155
NC_013282:1842412:1843675184367518469203246Cronobacter turicensis, complete genomehypothetical protein5e-1683.2
NC_020260:1293860:1294506129450612976673162Cronobacter sakazakii Sp291, complete genomehypothetical protein6e-1683.2
NC_007434:1809946:1813421181342118166993279Burkholderia pseudomallei 1710b chromosome I, complete sequencegp206e-1063.2
NC_009778:2227627:2240805224080522439033099Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-1062.4
NC_015062:58826:7352373523767083186Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein2e-0858.2
NC_015379:4630367:4660073466007346636303558Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative phage host specificity protein3e-0754.3
NC_009436:2395913:2410224241022424134093186Enterobacter sp. 638, complete genomefibronectin type III domain-containing protein5e-0753.5