Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1464636 Shigella sonnei 53G, complete genome

Start: 1464636, End: 1466849, Length: 2214

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:3085000:3103228310322831054382211Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-162574
NC_009778:2227627:2245990224599022484282439Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-25118
NC_008702:2039462:2053263205326320555752313Azoarcus sp. BH72, complete genomehypothetical phage tail tape measure protein4e-1067.4
NC_015968:3277217:3292846329284632952662421Enterobacter asburiae LF7a chromosome, complete genomeProphage tail length tape measure5e-0963.9
NC_011963:325806:3466693466693515674899Rhodobacter sphaeroides KD131 chromosome 1, complete sequencehypothetical protein1e-0862.4
NC_007493:207932:2296552296552346615007Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencephage-related protein, probable phage tail tape meausure protein, lambda family9e-0859.3
NC_007493:628243:6518236518236568445022Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencePotential phage tail tape measure protein9e-0859.3
NC_020908:4093560:4100740410074041031812442Octadecabacter arcticus 238, complete genomeputative phage tail tape measure protein2e-0758.5
NC_011963:3073283:3092788309278830969454158Rhodobacter sphaeroides KD131 chromosome 1, complete sequencePotential phage tail tape measure protein2e-0654.7
NC_006138:1735723:1773245177324517758062562Desulfotalea psychrophila LSv54, complete genomehypothetical protein6e-0653.5