Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1431200 Shigella sonnei 53G, complete genome

Start: 1431200, End: 1431703, Length: 504

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:2514544:253119825311982531698501Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeYbaK/prolyl-tRNA synthetase-associated domain protein5e-65246
NC_014837:2803447:280561728056172806093477Pantoea sp. At-9b chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated region1e-50198
NC_010694:1502019:152573015257301526224495Erwinia tasmaniensis, complete genomehypothetical protein3e-49194
NC_016816:1676460:170578417057841706260477Pantoea ananatis LMG 5342, complete genomeYbaK/prolyl-tRNA synthetase associated domain-containing protein4e-49193
NC_013956:2749685:275281527528152753291477Pantoea ananatis LMG 20103 chromosome, complete genomeYeaK4e-49193
NC_014562:2049921:205272620527262053202477Pantoea vagans C9-1 chromosome, complete genomeUncharacterized protein yeaK5e-49192
NC_013961:2260250:226406722640672264543477Erwinia amylovora, complete genomeProlyl-tRNA synthetase3e-47187
NC_013971:2297777:230159423015942302070477Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-47187
NC_020211:379000:396027396027396533507Serratia marcescens WW4, complete genomehypothetical protein1e-43175
NC_007511:1681764:168566216856621686165504Burkholderia sp. 383 chromosome 2, complete sequenceconserved hypothetical protein, YbaK/prolyl-tRNA synthetase associated region2e-27121
NC_018750:3249756:327028732702873270781495Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein3e-2097.8
NC_007777:4016000:403418340341834034671489Frankia sp. CcI3, complete genomeYbaK/prolyl-tRNA synthetase-like protein3e-1684.3
NC_016582:1707756:171457117145711715068498Streptomyces bingchenggensis BCW-1 chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated domain-containing protein2e-1374.7