Pre_GI: BLASTP Hits

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Query: NC_016582:9422650:9430746 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9430746, End: 9431297, Length: 552

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013235:4045589:404558940455894046158570Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, MarR family2e-1788.6
NC_013235:402819:421510421510422016507Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, MarR family2e-1375.5
NC_013235:4045589:405627940562794056767489Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, MarR family5e-1063.9
NC_009142:2692693:270900727090072709558552Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, MarR family4e-0857.8
NC_013131:2517861:253429125342912534746456Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, MarR family1e-0653.1
NC_019673:526000:546388546388546852465Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, MarR family4e-0650.8
NC_016935:4435759:445609844560984456553456Paenibacillus mucilaginosus 3016 chromosome, complete genomeMarR family transcriptional regulator7e-0650.4