Pre_GI: BLASTP Hits

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Query: NC_016582:9422650:9422650 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9422650, End: 9423678, Length: 1029

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013235:4045589:4066003406600340670491047Nakamurella multipartita DSM 44233, complete genomeC4-dicarboxylate transporter/malic acid transport protein4e-30132
NC_010170:1661915:1684059168405916852371179Bordetella petrii, complete genomehypothetical protein1e-25117
NC_013730:140621:1581761581761592311056Spirosoma linguale DSM 74, complete genomeC4-dicarboxylate transporter/malic acid transport protein3e-25115
NC_002928:1351750:1370798137079813718891092Bordetella parapertussis 12822, complete genomeputative C4-dicarboxylate transporter1e-23110
NC_015850:1947000:1969273196927319703341062Acidithiobacillus caldus SM-1 chromosome, complete genomeC4-dicarboxylate transporter/malic acid transport protein8e-23108
NC_016002:2825017:2831401283140128324471047Pseudogulbenkiania sp. NH8B, complete genomeC4-dicarboxylate transporter/malic acid transport protein9e-23107
NC_007406:857625:8694538694538705261074Nitrobacter winogradskyi Nb-255, complete genomeC4-dicarboxylate transporter/malic acid transport protein2e-22107
NC_015474:1794879:1801166180116618021851020Pyrococcus sp. NA2 chromosome, complete genomeC4-dicarboxylate transporter, putative4e-0756.2
NC_013887:1383127:1395351139535113963731023Methanocaldococcus sp. FS406-22 chromosome, complete genomeC4-dicarboxylate transporter/malic acid transport protein4e-0755.8