Pre_GI: BLASTP Hits

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Query: NC_016582:7699420:7699420 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7699420, End: 7700028, Length: 609

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008278:925231:933885933885934556672Frankia alni ACN14a, complete genometranscriptional regulatory protein; TetR family5e-26117
NC_020541:2694836:271256127125612713163603Rhodanobacter sp. 2APBS1, complete genometranscriptional regulator3e-22104
NC_013446:4723380:472578547257854726579795Comamonas testosteroni CNB-2, complete genometranscriptional regulator, TetR family6e-22103
NC_008781:3688965:369078736907873691530744Polaromonas naphthalenivorans CJ2, complete genometranscriptional regulator, TetR family3e-2098.6
NC_014323:245979:261271261271261972702Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein1e-1892.8
NC_014815:2639339:264161826416182642256639Micromonospora sp. L5 chromosome, complete genomeregulatory protein tetr1e-1686.3
NC_014391:6640327:664901766490176649655639Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeregulatory protein TetR1e-1686.3
NC_002928:1351750:136673813667381367427690Bordetella parapertussis 12822, complete genomeputative TetR-family transcriptional regulator8e-1683.6
NC_014640:2693060:271003227100322710589558Achromobacter xylosoxidans A8 chromosome, complete genomeTetR family transcriptional regulator3e-1375.1