Pre_GI: BLASTP Hits

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Query: NC_016582:7101701:7104771 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7104771, End: 7106417, Length: 1647

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:6127431:6127431612743161290771647Streptomyces fulvissimus DSM 40593, complete genomeResolvase, N domain protein4e-27123
NC_006322:4149500:4174019417401941752631245Bacillus licheniformis ATCC 14580, complete genomeSpoIVCA1e-0965.5
NC_006270:4149004:4173904417390441751481245Bacillus licheniformis ATCC 14580, complete genomesite-specific DNA recombinase1e-0965.5
NC_017351:643674:6436746436746450501377Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeresolvase, N terminal domain protein1e-0861.6
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision2e-0861.6
NC_015312:848403:8526538526538543411689Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeResolvase domain-containing protein7e-0859.3
NC_014366:2826575:2833647283364728350021356Gamma proteobacterium HdN1, complete genomePredicted site-specific recombinase9e-0858.9
NC_013722:2810721:2842626284262628440141389Xanthomonas albilineans, complete genomeputative site-specific integrase protein1e-0758.5
NC_015422:2078618:2093031209303120944101380Alicycliphilus denitrificans K601 chromosome, complete genomeresolvase domain-containing protein2e-0758.2
NC_013739:3006719:3019445301944530209741530Conexibacter woesei DSM 14684, complete genomeResolvase domain protein2e-0757.8
NC_012491:3736167:3770304377030437719441641Brevibacillus brevis NBRC 100599, complete genomeputative integrase4e-0756.6
NC_004757:2730057:2780172278017227815271356Nitrosomonas europaea ATCC 19718, complete genomeSite-specific recombinase9e-0755.8
NC_014910:1912552:1921502192150219228811380Alicycliphilus denitrificans BC chromosome, complete genomeresolvase domain protein1e-0655.5
NC_014034:2899120:2911608291160829129331326Rhodobacter capsulatus SB1003 chromosome, complete genomeresolvase family protein2e-0655.1
NC_003295:921256:9375829375829389641383Ralstonia solanacearum GMI1000, complete genomePUTATIVE SITE-SPECIFIC INTEGRASE/RECOMBINASE PROTEIN2e-0654.7
NC_014311:198542:2098252098252112131389Ralstonia solanacearum PSI07 chromosome, complete genomesite-specific resolvase protein2e-0654.3
NC_006361:4597718:461824246182424618640399Nocardia farcinica IFM 10152, complete genomeputative invertase3e-0654.3
NC_003295:3421520:3430395343039534317831389Ralstonia solanacearum GMI1000, complete genomePUTATIVE SITE-SPECIFIC INTEGRASE/RESOLVASE PROTEIN3e-0653.9
NC_017082:532000:5446575446575458981242Bradyrhizobium sp. S23321, complete genomehypothetical protein3e-0653.9
NC_013441:1487058:149085514908551491550696Gordonia bronchialis DSM 43247, complete genomeResolvase domain protein7e-0652.8