Pre_GI: BLASTP Hits

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Query: NC_016582:7033000:7063088 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7063088, End: 7063651, Length: 564

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:3026000:303729130372913038223933Streptomyces cattleya NRRL 8057, complete genomehypothetical protein8e-68256
NC_021177:3598700:361305336130533613970918Streptomyces fulvissimus DSM 40593, complete genomePutative phage or prophage related protein3e-44177
NC_016111:2932495:2941279294127929423011023Streptomyces cattleya NRRL 8057, complete genomephage or prophage related protein6e-41166
NC_018750:6132619:6146338614633861474861149Streptomyces venezuelae ATCC 10712, complete genomePrimosomal protein I3e-39161
NC_015859:952500:963383963383964303921Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein1e-1272.8
NC_014652:420457:4578224578224594981677Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein7e-0960.5
NC_012034:2555447:2577233257723325789091677Anaerocellum thermophilum DSM 6725, complete genomehypothetical protein1e-0859.7
NC_013132:4803460:482216048221604823017858Chitinophaga pinensis DSM 2588, complete genomehypothetical protein1e-0859.3
NC_010002:3509506:353465335346533535453801Delftia acidovorans SPH-1, complete genomehypothetical protein6e-0857.4
NC_014652:801653:805351805351806289939Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein1e-0756.6