Pre_GI: BLASTP Hits

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Query: NC_016582:5987039:5997469 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5997469, End: 5998329, Length: 861

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007633:790881:819238819238820092855Mycoplasma capricolum subsp. capricolum ATCC 27343, completemethylene-tetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase6e-1788.2
NC_014394:1325616:133807213380721338932861Gallionella capsiferriformans ES-2 chromosome, complete genomeMethylenetetrahydrofolate dehydrogenase (NADP(+))2e-1583.2
NC_015947:1877887:187788718778871878765879Burkholderia sp. JV3 chromosome, complete genomeBifunctional protein folD2e-1583.2
NC_011071:1877500:187964618796461880524879Stenotrophomonas maltophilia R551-3, complete genomeMethenyltetrahydrofolate cyclohydrolase2e-1583.2
NC_010943:2091199:209414520941452095023879Stenotrophomonas maltophilia K279a, complete genomeputative FolD bifunctional protein2e-1582.8
NC_010830:1171781:119294911929491193845897Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-1582.4
NC_011726:1665315:166531516653151666193879Cyanothece sp. PCC 8801, complete genomeMethenyltetrahydrofolate cyclohydrolase1e-1480.9
NC_002928:3781657:379431437943143795189876Bordetella parapertussis 12822, complete genomebifunctional protein [includes: methylenetetrahydrofolate dehydrogenase and methylenetetrahydrofolate cyclohydrolase]1e-1480.5
NC_015318:706374:713499713499714341843Hippea maritima DSM 10411 chromosome, complete genomeBifunctional protein folD1e-1480.1
NC_017030:6297351:630856863085686309419852Corallococcus coralloides DSM 2259 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase2e-1376.6
NC_012214:2805297:282230728223072823173867Erwinia pyrifoliae Ep1/96, complete genomeBifunctional protein [includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase]3e-1375.9
NC_021150:2348214:235704123570412357895855Azotobacter vinelandii CA6, complete genomebifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase1e-1273.9
NC_012560:2348202:235702923570292357883855Azotobacter vinelandii DJ, complete genomemethenyltetrahydrofolate cyclohydrolase1e-1273.9
NC_009342:841500:842118842118842972855Corynebacterium glutamicum R chromosome, complete genomebifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase2e-1273.2
NC_017033:1672313:167459916745991675456858Frateuria aurantia DSM 6220 chromosome, complete genome5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase3e-1272.8
NC_020164:1784223:179857017985701799427858Staphylococcus warneri SG1, complete genomebifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase4e-1272
NC_015161:36668:564485644857380933Deinococcus proteolyticus MRP chromosome, complete genomeBifunctional protein folD7e-1271.6
NC_016788:527351:536684536684537529846Corynebacterium diphtheriae HC04 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase8e-1271.2
NC_016783:537717:550897550897551742846Corynebacterium diphtheriae INCA 402 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase8e-1271.2
NC_016782:537412:546746546746547591846Corynebacterium diphtheriae 241 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase7e-1271.2
NC_016786:533537:546717546717547562846Corynebacterium diphtheriae HC01 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase7e-1271.2
NC_015410:2351464:236096223609622361816855Pseudomonas mendocina NK-01 chromosome, complete genomebifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase7e-1271.2
NC_004578:4204235:421690442169044217758855Pseudomonas syringae pv. tomato str. DC3000, complete genomemethylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase1e-1170.1
NC_012704:1870000:187041018704101871264855Corynebacterium kroppenstedtii DSM 44385, complete genomemethylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase2e-1170.1
NC_011758:326366:340046340046340966921Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeMethenyltetrahydrofolate cyclohydrolase4e-1168.9
NC_004129:4596040:460881546088154609669855Pseudomonas fluorescens Pf-5, complete genome5,10-methylene-tetrahydrofolate dehydrogenase/cyclohydrolase4e-1168.9
NC_016642:1913432:193110419311041931997894Pseudovibrio sp. FO-BEG1 chromosome, complete genomeBifunctional protein FolD (Methylenetetrahydrofolate dehydrogenase, Methenyltetrahydrofolate cyclohydrolase)3e-1168.9
NC_007168:1923723:194005619400561940913858Staphylococcus haemolyticus JCSC1435, complete genomeFolD bifunctional protein5e-1168.6
NC_008570:2014151:202735620273562028219864Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeFolD bifunctional protein8e-1167.8
NC_007645:2204066:220731022073102208194885Hahella chejuensis KCTC 2396, complete genome5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase8e-1167.8
NC_014562:469154:473343473343474209867Pantoea vagans C9-1 chromosome, complete genome5,10-methylene-tetrahydrofolate dehydrogenase1e-1067.4
NC_016816:3373950:338575133857513386617867Pantoea ananatis LMG 5342, complete genomebifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase1e-1067.4
NC_008699:3775561:379919837991983800049852Nocardioides sp. JS614, complete genomeMethylenetetrahydrofolate dehydrogenase (NADP(+))1e-1067
NC_016776:3587983:360433236043323605213882Bacteroides fragilis 638R, complete genomeputative methenyltetrahydrofolate cyclohydrolase2e-1066.6
NC_003228:3545811:355893935589393559820882Bacteroides fragilis NCTC 9343, complete genomeputative methenyltetrahydrofolate cyclohydrolase2e-1066.6
NC_006347:3638165:365128936512893652170882Bacteroides fragilis YCH46, complete genomemethylenetetrahydrofolate dehydrogenase2e-1066.6
NC_015164:1120288:113631111363111137192882Bacteroides salanitronis DSM 18170 chromosome, complete genomeBifunctional protein folD2e-1066.6
NC_013956:1207500:121024512102451211111867Pantoea ananatis LMG 20103 chromosome, complete genomeFolD4e-1065.5
NC_014837:1144500:114627811462781147144867Pantoea sp. At-9b chromosome, complete genomemethylenetetrahydrofolate dehydrogenase (NADP(+))8e-1064.7
NC_017514:96911:118628118628119386759Neisseria meningitidis M01-240149 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase6e-1064.7
NC_007712:1182518:118778911877891188661873Sodalis glossinidius str. 'morsitans', complete genome5,10-methylene-tetrahydrofolate dehydrogenase9e-1064.3
NC_004461:746284:750624750624751484861Staphylococcus epidermidis ATCC 12228, complete genomemethenyltetrahydrofolate cyclohydrolase2e-0963.2
NC_002976:638799:643140643140644000861Staphylococcus epidermidis RP62A, complete genomemethylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase2e-0962.8
NC_011295:929293:943560943560944381822Coprothermobacter proteolyticus DSM 5265, complete genomebifunctional protein FolD4e-0858.9
NC_014659:3654979:365775036577503658619870Rhodococcus equi 103S, complete genomemethylenetetrahydrofolate dehydrogenase-reductase/formate-tetrahydrofolate ligase2e-0757
NC_006361:3615322:363454736345473635398852Nocardia farcinica IFM 10152, complete genomeputative methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase6e-0755.1
NC_011999:728353:738887738887739735849Macrococcus caseolyticus JCSC5402, complete genomeFolD bifunctional protein7e-0754.7
NC_014721:1028841:103442810344281035297870Caldicellulosiruptor kristjanssonii 177R1B chromosome, completemethylenetetrahydrofolate dehydrogenase (nadp(+))2e-0653.1
NC_007503:1680513:168399216839921684855864Carboxydothermus hydrogenoformans Z-2901, complete genomemethylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase4e-0652.4
NC_016630:28410:305413054131431891Filifactor alocis ATCC 35896 chromosome, complete genomemethylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase5e-0651.6
NC_009921:4948500:497379749737974974624828Frankia sp. EAN1pec, complete genomeMethylenetetrahydrofolate dehydrogenase (NADP(+))9e-0651.2