Pre_GI: BLASTP Hits

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Query: NC_016582:4934854:4955658 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4955658, End: 4956545, Length: 888

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012704:652589:6543696543696554061038Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family2e-0860.1
NC_016111:2257166:227095022709502271552603Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator1e-0757.4
NC_008268:6149576:615238661523866153054669Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, TetR family1e-0757.4
NC_009664:1195630:121844612184461219123678Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family3e-0756.2
NC_017186:8683964:8687504868750486886821179Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator9e-0754.3
NC_014318:8687448:8687448868744886886261179Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator9e-0754.3
NC_020126:7661551:768145276814527682090639Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator2e-0653.5
NC_016887:1714664:174835117483511749094744Nocardia cyriacigeorgica GUH-2, complete genomeTetR family transcriptional regulator2e-0653.5