Pre_GI: BLASTP Hits

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Query: NC_016582:2641499:2643928 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 2643928, End: 2645067, Length: 1140

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013173:1861269:1877676187767618787251050Desulfomicrobium baculatum DSM 4028, complete genomehypothetical protein2e-82306
NC_014366:1814000:1819935181993518213981464Gamma proteobacterium HdN1, complete genomehypothetical protein9e-65247
NC_017506:971482:9744889744889755131026Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein2e-62239
NC_010571:637398:6674656674656690361572Opitutus terrae PB90-1, complete genomehypothetical protein1e-61236
NC_017986:2687588:2698950269895027004791530Pseudomonas putida ND6 chromosome, complete genomehypothetical protein3e-57223
NC_014217:2172464:2191465219146521928591395Starkeya novella DSM 506 chromosome, complete genomeProtein of unknown function DUF22351e-49197
NC_010296:5557853:5577305557730555784141110Microcystis aeruginosa NIES-843, complete genomehypothetical protein2e-48192
NC_011979:3495432:3510895351089535124241530Geobacter sp. FRC-32, complete genomehypothetical protein1e-45184
NC_010296:5557853:5557853555785355598171965Microcystis aeruginosa NIES-843, complete genomehypothetical protein3e-43176
NC_014006:2626544:2632352263235226335361185Sphingobium japonicum UT26S chromosome 1, complete genomehypothetical protein2e-38159
NC_014834:2206119:2245596224559622478722277Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein7e-38158
NC_008435:2658986:2751599275159927539352337Rhodopseudomonas palustris BisA53, complete genomehypothetical protein5e-37155
NC_015675:5607297:5616049561604956172241176Mesorhizobium opportunistum WSM2075 chromosome, complete genomehypothetical protein2e-35150
NC_017082:6687020:6701368670136867041242757Bradyrhizobium sp. S23321, complete genomehypothetical protein9e-35147
NC_013508:1289159:1320382132038213215781197Edwardsiella tarda EIB202, complete genomehypothetical protein8e-32138
NC_017249:908500:9187279187279198781152Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-29130
NC_009719:1972545:1982131198213119834291299Parvibaculum lavamentivorans DS-1 chromosome, complete genomehypothetical protein3e-28126
NC_007948:1574881:1593385159338515948091425Polaromonas sp. JS666, complete genomehypothetical protein5e-1582.4
NC_011892:77975:1188441188441204061563Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completehypothetical protein2e-1273.6
NC_011757:1091486:1093539109353910950831545Methylobacterium chloromethanicum CM4, complete genomehypothetical protein2e-0963.9