Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:11920331:11933409 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11933409, End: 11934110, Length: 702

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015675:4526500:452671345267134527495783Mesorhizobium opportunistum WSM2075 chromosome, complete genomealpha/beta hydrolase fold protein2e-39162
NC_015957:7408466:742935374293537430231879Streptomyces violaceusniger Tu 4113 chromosome, complete genomealpha/beta hydrolase fold protein2e-36152
NC_013757:2630000:263496326349632635712750Geodermatophilus obscurus DSM 43160, complete genomehypothetical protein2e-35149
NC_010725:4035397:407083040708304071597768Methylobacterium populi BJ001, complete genomehypothetical protein3e-30132
NC_011757:1532047:153631915363191537098780Methylobacterium chloromethanicum CM4, complete genomehypothetical protein1e-29129
NC_010505:4990472:501890650189065019685780Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein6e-29127
NC_010505:4990472:500954650095465010313768Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein1e-28126
NC_008314:1955793:196469619646961965562867Ralstonia eutropha H16 chromosome 2, complete sequenceputative extracytoplasmic hydrolase3e-28125
NC_012917:3378759:337974933797493380522774Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeputative secreted protein2e-28125
NC_015434:4640769:466529446652944666013720Verrucosispora maris AB-18-032 chromosome, complete genomehydrolase protein2e-28125
NC_008800:3061484:308490030849003085592693Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein2e-28125
NC_016609:6750111:679255067925506793341792Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein2e-28125
NC_014500:3744705:374569437456943746467774Dickeya dadantii 3937 chromosome, complete genomeputative hydrolases or acyltransferases (alpha/beta hydrolase superfamily)6e-28124
NC_014307:533975:543572543572544420849Ralstonia solanacearum CFBP2957 chromosome, complete genomehydrolase4e-27121
NC_003295:2507850:252848825284882529267780Ralstonia solanacearum GMI1000, complete genomePROBABLE SIGNAL PEPTIDE PROTEIN7e-27120
NC_010508:1898547:191270719127071913537831Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencehypothetical protein3e-26118
NC_015379:4249238:427022842702284271001774Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Conserved hypothetical protein; putative exported protein6e-26117
NC_015508:296856:335384335384336145762Agrobacterium sp. H13-3 chromosome linear, complete sequenceputative hydrolase protein2e-25116
NC_016631:1329702:134553613455361346237702Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein5e-24111
NC_020453:7826358:784891378489137849665753Agromonas oligotrophica S58 DNA, complete genomehypothetical protein6e-24110
NC_020453:7826358:785318478531847853939756Agromonas oligotrophica S58 DNA, complete genomehypothetical protein5e-22104
NC_007510:943068:956470956470957165696Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein9e-21100
NC_014100:2782000:278608527860852786816732Caulobacter segnis ATCC 21756 chromosome, complete genomehypothetical protein2e-1995.9
NC_012988:1777618:180146018014601801936477Methylobacterium extorquens DM4, complete genomehypothetical protein2e-1583.2
NC_003888:32134:3761437614387681155Streptomyces coelicolor A3(2), complete genometranscriptional regulator1e-0860.1
NC_015566:2957956:296734729673472967565219Serratia sp. AS12 chromosome, complete genome2e-0859.7
NC_008061:2106848:213450221345022134945444Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein3e-0858.9
NC_008543:127675:134826134826135269444Burkholderia cenocepacia HI2424 chromosome 2, complete sequencehypothetical protein3e-0858.9
NC_016609:2150863:216035521603552161188834Niastella koreensis GR20-10 chromosome, complete genomealpha/beta hydrolase fold protein2e-0756.2
NC_009921:5508000:551022155102215510922702Frankia sp. EAN1pec, complete genomeconserved hypothetical protein2e-0653.1
NC_016631:3245501:325545232554523256159708Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein2e-0652.8