Pre_GI: BLASTP Hits

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Query: NC_016582:11820671:11851720 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11851720, End: 11852556, Length: 837

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017186:8588000:8608475860847586098871413Amycolatopsis mediterranei S699 chromosome, complete genomealpha-N-arabinofuranosidase9e-81300
NC_014318:8590078:8608380860838086098311452Amycolatopsis mediterranei U32 chromosome, complete genomealpha-N-arabinofuranosidase1e-80299
NC_015514:3508022:3533569353356935350711503Cellulomonas fimi ATCC 484 chromosome, complete genomealpha-N-arabinofuranosidase4e-57221
NC_013093:5922777:5926380592638059279031524Actinosynnema mirum DSM 43827, complete genomeAlpha-N-arabinofuranosidase1e-53209
NC_013929:2583849:2600847260084726022741428Streptomyces scabiei 87.22 chromosome, complete genomearabinofuranosidase1e-51203
NC_011898:1512213:1514537151453715161471611Clostridium cellulolyticum H10, complete genomeCarbohydrate binding family 63e-41169
NC_011898:1512213:1529200152920015315422343Clostridium cellulolyticum H10, complete genomeCarbohydrate binding family 65e-41167
NC_016791:1079322:1079322107932210809411620Clostridium sp. BNL1100 chromosome, complete genomeputative glycosylase6e-41167
NC_016791:1079322:1090492109049210928222331Clostridium sp. BNL1100 chromosome, complete genomeputative glycosylase6e-41167
NC_012997:4672147:4674232467423246753501119Teredinibacter turnerae T7901, complete genomeglycoside hydrolase family 62 domain protein3e-38159