Pre_GI: BLASTP Hits

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Query: NC_016582:11672500:11679366 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11679366, End: 11680262, Length: 897

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:3541012:354813635481363549038903Streptosporangium roseum DSM 43021, complete genomehypothetical protein5e-127454
NC_012522:3867167:389549838954983896415918Rhodococcus opacus B4, complete genomehypothetical protein5e-106384
NC_010572:1748668:176829017682901769207918Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative phosphotransferase2e-101369
NC_014210:1625954:163049216304921631409918Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,aminoglycoside phosphotransferase4e-98358
NC_013406:4023367:404309140430914043975885Paenibacillus sp. Y412MC10 chromosome, complete genomeaminoglycoside phosphotransferase1e-24113
NC_015588:95697:110913110913111833921Isoptericola variabilis 225 chromosome, complete genomeaminoglycoside phosphotransferase1e-22107
NC_011725:2949519:296992629699262970804879Bacillus cereus B4264 chromosome, complete genomeaminoglycoside phosphotransferase7e-22104
NC_013947:5682895:568698556869855687896912Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeaminoglycoside phosphotransferase2e-1996.3
NC_013406:2866000:286938028693802870291912Paenibacillus sp. Y412MC10 chromosome, complete genomeaminoglycoside phosphotransferase3e-1995.9
NC_009921:4903688:4912028491202849130471020Frankia sp. EAN1pec, complete genomeaminoglycoside phosphotransferase7e-1891.3
NC_020211:2123819:213929821392982140197900Serratia marcescens WW4, complete genomephosphotransferase1e-1790.9
NC_012914:5618000:565147256514725652392921Paenibacillus sp. JDR-2, complete genomeaminoglycoside phosphotransferase4e-1685.5
NC_009664:4423829:463824046382404639238999Kineococcus radiotolerans SRS30216, complete genomeaminoglycoside phosphotransferase8e-1684.3
NC_014019:2711500:273342227334222734330909Bacillus megaterium QM B1551 chromosome, complete genomephosphotransferase6e-1581.6
NC_013093:3068486:3110811311081131133272517Actinosynnema mirum DSM 43827, complete genomeNB-ARC domain protein8e-1271.2