Pre_GI: BLASTP Hits

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Query: NC_016582:11380000:11401771 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11401771, End: 11402694, Length: 924

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016627:3205333:3209626320962632113501725Clostridium clariflavum DSM 19732 chromosome, complete genomebeta-xylosidase4e-73275
NC_019960:1232851:1264583126458312672132631Prevotella dentalis DSM 3688 chromosome 1, complete sequenceglycosyl hydrolase family 43,F5/8 type C domain-containing protein2e-41169
NC_014655:2782707:2789989278998927910951107Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 432e-29129
NC_019968:1084288:1087159108715910882951137Prevotella dentalis DSM 3688 chromosome 2, complete sequencebeta-xylosidase1e-27123
NC_015690:1818333:1877654187765418787301077Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein1e-21104
NC_016935:2347691:2407429240742924085051077Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-21103
NC_009921:5275694:5286626528662652877081083Frankia sp. EAN1pec, complete genomeconserved hypothetical protein9e-2097.8
NC_018265:75658:9198191981941912211Melissococcus plutonius DAT561 plasmid 1, complete sequencehypothetical protein6e-1581.6
NC_011898:1512213:1516222151622215177511530Clostridium cellulolyticum H10, complete genomeCarbohydrate binding family 62e-0653.5
NC_018720:311844:3269693269693286031635Bifidobacterium asteroides PRL2011 chromosome, complete genomebeta-1,4-xylosidase7e-0651.6