Pre_GI: BLASTP Hits

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Query: NC_016582:10326938:10350908 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10350908, End: 10351474, Length: 567

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015556:2265940:230102223010222301573552Pseudomonas fulva 12-X chromosome, complete genomeregulatory protein TetR5e-1787.4
NC_014118:2369669:237288523728852373472588Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, TetR family3e-1684.7
NC_017186:361444:397274397274397849576Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator2e-1375.9
NC_014318:381384:397261397261397836576Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator2e-1375.9
NC_007777:2638580:266374526637452664266522Frankia sp. CcI3, complete genometranscriptional regulator, TetR family5e-1373.9
NC_008278:3601959:360548336054833606088606Frankia alni ACN14a, complete genomeputative PhlF, transcriptional repressor of 2, 4-DAPG biosynthesis, TetR family7e-0753.5
NC_018750:8210500:821132182113218211944624Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family4e-0651.2