Pre_GI: BLASTP Hits

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Query: NC_016582:10287865:10291855 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10291855, End: 10292607, Length: 753

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014639:2169277:218200821820082182754747Bacillus atrophaeus 1942 chromosome, complete genomeacetoacetate decarboxylase7e-93340
CP002207:2169277:218200821820082182754747Bacillus atrophaeus 1942, complete genomeacetoacetate decarboxylase7e-93340
UCMB5137:2128500:214531221453122146058747Bacillus atrophaeus UCMB-5137acetoacetate decarboxylase1e-92339
NC_010515:1491590:150960015096001510340741Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceAcetoacetate decarboxylase8e-68256
NC_009075:15017:170841708418025942Burkholderia pseudomallei 668 chromosome II, complete sequenceputative acetoacetate decarboxylase2e-63242
NC_009783:1637000:164100816410081641829822Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein7e-58223
NC_009485:1487485:150186615018661502657792Bradyrhizobium sp. BTAi1 chromosome, complete genomeacetoacetate decarboxylase9e-56216
NC_011894:7702000:772130677213067722121816Methylobacterium nodulans ORS 2060, complete genomeAcetoacetate decarboxylase5e-25114
NC_012588:742000:755435755435756217783Sulfolobus islandicus M.14.25 chromosome, complete genomeacetoacetate decarboxylase1e-0757