Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10206387 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10206387, End: 10207364, Length: 978

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:7301546:731396873139687314945978Streptomyces violaceusniger Tu 4113 chromosome, complete genomeAsnC family transcriptional regulator8e-42171
NC_013926:829665:835441835441835863423Aciduliprofundum boonei T469 chromosome, complete genometranscriptional regulator, AsnC family1e-1274.3
NC_019942:112182:125969125969126391423Aciduliprofundum sp. MAR08-339, complete genometranscriptional regulator1e-1067.4
NC_015562:1386535:140879714087971409246450Methanotorris igneus Kol 5 chromosome, complete genomeAsnC family ranscriptional regulator2e-0963.5
NC_011529:1375920:138587513858751386300426Thermococcus onnurineus NA1, complete genometranscription regulator3e-0962.8
NC_006361:2225072:2227312222731222283611050Nocardia farcinica IFM 10152, complete genomehypothetical protein5e-0962.4
NC_013887:1402980:141868614186861419108423Methanocaldococcus sp. FS406-22 chromosome, complete genometranscriptional regulator, AsnC family1e-0757.4
NC_013887:90929:112143112143112589447Methanocaldococcus sp. FS406-22 chromosome, complete genometranscriptional regulator, AsnC family2e-0756.6
NC_013156:980888:998757998757999179423Methanocaldococcus fervens AG86, complete genometranscriptional regulator, AsnC family9e-0754.7
NC_012559:2663747:270361527036152704103489Laribacter hongkongensis HLHK9, complete genomeProbable transcriptional regulator, AsnC family3e-0653.1