Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10203314 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10203314, End: 10204120, Length: 807

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008148:1567703:1587349158734915887221374Rubrobacter xylanophilus DSM 9941, complete genomeglycine cleavage T protein (aminomethyl transferase)8e-56217
NC_013524:392089:4030814030814044811401Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeglycine cleavage T protein (aminomethyl transferase)4e-50198
NC_014376:1217000:1224545122454512259031359Clostridium saccharolyticum WM1 chromosome, complete genomeglycine cleavage T protein (aminomethyl transferase)4e-1685.1
NC_012808:2886282:2886282288628228876011320Methylobacterium extorquens AM1, complete genomeputative aminomethyltransferase3e-1582.4
NC_008148:792610:7987067987067999111206Rubrobacter xylanophilus DSM 9941, complete genomeAminomethyltransferase3e-0858.9