Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10174331 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10174331, End: 10174783, Length: 453

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:7716759:774645277464527746928477Streptosporangium roseum DSM 43021, complete genomehypothetical protein3e-32137
NC_013929:4807910:481957248195724820168597Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-1891.7
NC_013849:466091:482257482257483174918Ferroglobus placidus DSM 10642 chromosome, complete genomeIntermediate filament domain protein4e-1476.6
NC_002608:268000:2835292835292849681440Halobacterium sp. NRC-1 plasmid pNRC200, complete sequenceComA1e-1272.4
NC_015667:16511:2201622016234251410Halopiger xanaduensis SH-6 plasmid pHALXA02, complete sequencenuclease2e-1167.8
NC_014253:431942:4484154484154497581344Methanohalobium evestigatum Z-7303 chromosome, complete genomedeoxyribonuclease I6e-1166.2
NC_012029:1865518:1872857187285718742901434Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomebeta-lactamase domain protein1e-1065.1
NC_003901:3698164:3698164369816436995791416Methanosarcina mazei Go1, complete genomecompetence-like protein2e-1065.1