Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10160439 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10160439, End: 10161449, Length: 1011

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015312:1265797:1292946129294612939891044Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein8e-36151
NC_009921:8147947:818551281855128186501990Frankia sp. EAN1pec, complete genomehypothetical protein2e-32139
NC_013131:9903320:995314899531489954026879Catenulispora acidiphila DSM 44928, complete genomehypothetical protein1e-24114
NC_013739:5535945:556299055629905563910921Conexibacter woesei DSM 14684, complete genomehypothetical protein3e-21102
NC_015312:848403:8553728553728565681197Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein2e-1996.7
NC_013131:7889127:791444579144457915269825Catenulispora acidiphila DSM 44928, complete genomehypothetical protein3e-1996.3
NC_014815:6616500:669276066927606693611852Micromonospora sp. L5 chromosome, complete genomehypothetical protein1e-1894.4
NC_014391:2875553:288851428885142889455942Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein6e-0962
NC_013739:3006719:301844030184403019438999Conexibacter woesei DSM 14684, complete genomehypothetical protein2e-0860.5
NC_009142:949510:960785960785961561777Saccharopolyspora erythraea NRRL 2338, complete genomehypothetical protein3e-0756.6