Pre_GI: BLASTP Hits

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Query: NC_014169:231210:234074 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 234074, End: 234709, Length: 636

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014638:183115:204197204197204832636Bifidobacterium bifidum PRL2010 chromosome, complete genometetR family transcriptional regulator6e-119426
NC_009663:946285:960220960220960882663Sulfurovum sp. NBC37-1, complete genomeTetR family transcriptional regulator2e-1065.9
NC_014210:5048502:506671850667185067302585Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family6e-1064.3
NC_020133:4889034:490440849044084905100693Mycobacterium liflandii 128FXT, complete genomeTetR family transcriptional regulator6e-0960.8
NC_002944:1881405:188687318868731887457585Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein7e-0960.8
NC_008596:3404832:340867134086713409429759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, TetR family protein7e-0857.4
NC_020126:6344827:635200863520086352640633Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator7e-0857.4
NC_015711:7471500:747851474785147479170657Myxococcus fulvus HW-1 chromosome, complete genomeTetR family transcriptional regulator1e-0756.6
NC_009720:750612:779158779158779778621Xanthobacter autotrophicus Py2, complete genomeTetR family transcriptional regulator3e-0755.5
NC_016947:2210339:221402822140282214624597Mycobacterium intracellulare MOTT-02 chromosome, complete genomeTetR family transcriptional regulator4e-0754.7
NC_008095:5527707:553484855348485535489642Myxococcus xanthus DK 1622, complete genometranscriptional regulator, TetR family4e-0754.7
NC_002944:99000:104739104739105512774Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein5e-0754.3
NC_020126:5152359:515743651574365158020585Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator2e-0652.4
NC_019673:6473743:647426064742606474844585Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family2e-0652.4
NC_012914:5618000:562233156223315622906576Paenibacillus sp. JDR-2, complete genomeputative transcriptional regulator, TetR family3e-0652
NC_013131:4473410:449156644915664492117552Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, TetR family4e-0651.6
NC_009921:4948500:497210549721054972827723Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family5e-0651.2
NC_014976:759129:785436785436786035600Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator5e-0651.2