Pre_GI: BLASTP Hits

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Query: NC_013716:5020204:5047234 Citrobacter rodentium ICC168, complete genome

Start: 5047234, End: 5047791, Length: 558

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015224:3892972:392934439293443929880537Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-64244
NC_015424:2357600:237140823714082371935528Aeromonas veronii B565 chromosome, complete genomemajor facilitator superfamily permease4e-25114
NC_004460:973738:986340986340986852513Vibrio vulnificus CMCP6 chromosome II, complete sequencePermease of the major facilitator superfamily1e-1789.4
NC_008740:3520500:353490835349083535435528Marinobacter aquaeolei VT8, complete genomehypothetical protein3e-0754.7
NC_008321:3189974:320648632064863206992507Shewanella sp. MR-4, complete genomehypothetical protein4e-0651.2
NC_007963:2777066:277920027792002779727528Chromohalobacter salexigens DSM 3043, complete genomehypothetical protein4e-0651.2