Pre_GI: BLASTP Hits

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Query: NC_013716:4885776:4905085 Citrobacter rodentium ICC168, complete genome

Start: 4905085, End: 4905627, Length: 543

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:528296:539223539223539765543Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein8e-58222
NC_015061:4286000:429569942956994296256558Rahnella sp. Y9602 chromosome, complete genometype IV pilus biogenesis protein1e-1996.3
NC_014618:1040381:105611610561161056676561Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein3e-1477.8
NC_017047:4379989:438970543897054390142438Rahnella aquatilis HX2 chromosome, complete genometype IV pilus biogenesis protein2e-1375.1
NC_015761:299386:334505334505335074570Salmonella bongori NCTC 12419, complete genomepilus-related membrane protein2e-0652