Pre_GI: BLASTP Hits

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Query: NC_013716:4885776:4887725 Citrobacter rodentium ICC168, complete genome

Start: 4887725, End: 4888690, Length: 966

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015968:4117835:416579041657904166758969Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein5e-157553
NC_012880:3915500:393251039325103933430921Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF6 transmembrane2e-111402
NC_017515:800000:818464818464819387924Neisseria meningitidis M04-240196 chromosome, complete genomeintegral membrane protein3e-49195
NC_014150:1006000:101636510163651017222858Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF6 transmembrane1e-0860.8
NC_012225:1015452:101545210154521016309858Brachyspira hyodysenteriae WA1, complete genomehypothetical protein9e-0858.2
NC_011772:3259483:327686232768623277746885Bacillus cereus G9842, complete genometransporter, EamA family5e-0652.4
NC_014328:4249032:426809142680914268978888Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein7e-0651.6