Pre_GI: BLASTP Hits

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Query: NC_013716:357928:378404 Citrobacter rodentium ICC168, complete genome

Start: 378404, End: 379753, Length: 1350

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:2482901:2502434250243425037621329Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,porin B8e-76284
NC_015663:1869000:1889913188991318911991287Enterobacter aerogenes KCTC 2190 chromosome, complete genomecarbohydrate-selective porin OprB3e-65249
NC_014310:2017927:2032198203219820335681371Ralstonia solanacearum PSI07 megaplasmid, complete sequenceporin b (outer membrane) (glucose porin) transmembrane protein2e-55217
NC_015663:3466471:3493269349326934946151347Enterobacter aerogenes KCTC 2190 chromosome, complete genomecarbohydrate-selective porin OprB4e-44179
NC_017271:2789667:2791578279157827928551278Xanthomonas campestris pv. raphani 756C chromosome, completecarbohydrate-selective porin OprB4e-1996.3
NC_015709:1459838:1478074147807414795671494Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completecarbohydrate-selective porin OprB7e-1892.4
NC_007508:3034718:3036632303663230379091278Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecarbohydrate-selective porin OprB2e-1790.9
NC_016027:1357659:1398621139862114001531533Gluconacetobacter xylinus NBRC 3288, complete genomecarbohydrate-selective porin B1e-1171.6
NC_016027:123853:1342681342681357581491Gluconacetobacter xylinus NBRC 3288, complete genomecarbohydrate-selective porin B5e-1066.2
NC_016027:229180:2473502473502488491500Gluconacetobacter xylinus NBRC 3288, complete genomecarbohydrate-selective porin B6e-1065.9