Pre_GI: BLASTP Hits

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Query: NC_013716:357928:374038 Citrobacter rodentium ICC168, complete genome

Start: 374038, End: 375177, Length: 1140

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015224:3820338:3830018383001838311481131Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,AatP, permease1e-163575
CU928159:30700:3984239842410051164Escherichia coli str. 55989 plasmid 55989p, complete genomeAatP permease3e-65249
NC_009786:43331:6059660596617351140Escherichia coli E24377A plasmid pETEC_80, complete sequenceputative efflux ABC transporter, permease protein9e-39161