Pre_GI: BLASTP Hits

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Query: NC_013716:3109700:3146881 Citrobacter rodentium ICC168, complete genome

Start: 3146881, End: 3147786, Length: 906

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013353:3669500:367887136788713679755885Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector EspF2e-76286
AP010958:3669500:367887136788713679755885Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector EspF2e-76286
NC_013941:4470932:447674944767494477513765Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeespF2e-69262
NC_002655:4653160:465824046582404658986747Escherichia coli O157:H7 EDL933, complete genomeespF3e-64245
NC_002695:4584177:458925745892574590003747Escherichia coli O157:H7 str. Sakai, complete genomeEspF3e-64245
NC_013008:4643825:464840246484024649148747Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III effector3e-64245
NC_013364:3701895:372061137206113721399789Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector EspF2e-60233
NC_013361:5319497:536404553640455364668624Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector EspF1e-49197
NC_011601:4096427:410327141032714103891621Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeLEE-encoded effector EspF2e-47189
NC_011353:4688000:469236146923614692798438Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprotein EspF2e-40166
NC_011353:1195179:121414312141431214895753Escherichia coli O157:H7 str. EC4115 chromosome, complete genome5e-1065.1