Pre_GI: BLASTP Hits

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Query: NC_013716:2898434:2905214 Citrobacter rodentium ICC168, complete genome

Start: 2905214, End: 2905456, Length: 243

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015761:2373967:237976323797632380005243Salmonella bongori NCTC 12419, complete genomehypothetical protein9e-39158
NC_019902:2372097:238815223881522388397246Thioalkalivibrio nitratireducens DSM 14787, complete genomehypothetical protein7e-1579.3
NC_018012:4184500:419195241919524192194243Thiocystis violascens DSM 198 chromosome, complete genomehypothetical protein2e-1064.3
NC_013889:1514799:152468915246891524934246Thioalkalivibrio sp. K90mix chromosome, complete genomehypothetical protein2e-1064.3
NC_013508:3188978:324237732423773242616240Edwardsiella tarda EIB202, complete genomehypothetical protein3e-1063.9
NC_014960:2638562:264237826423782642614237Anaerolinea thermophila UNI-1, complete genomehypothetical protein5e-1063.2
NC_014960:2371989:238679823867982387034237Anaerolinea thermophila UNI-1, complete genomehypothetical protein5e-1063.2
NC_010803:1132500:114669311466931146932240Chlorobium limicola DSM 245, complete genomehypothetical protein6e-0959.3
NC_002932:1798869:182202818220281822267240Chlorobium tepidum TLS, complete genomehypothetical protein1e-0858.5