Pre_GI: BLASTP Hits

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Query: NC_013716:2476334:2489387 Citrobacter rodentium ICC168, complete genome

Start: 2489387, End: 2490385, Length: 999

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009778:1902995:192049519204951921493999Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-100365
NC_011770:3626000:3646724364672436477251002Pseudomonas aeruginosa LESB58, complete genomeputative transporter, bile acid/Na+ symporter family7e-82304
NC_008463:3394000:3415099341509934161001002Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transporter, bile acid/Na+ symporter family1e-81303
NC_008752:3828438:3828905382890538299511047Acidovorax avenae subsp. citrulli AAC00-1, complete genomeBile acid:sodium symporter4e-81301
NC_013174:309943:347527347527348504978Jonesia denitrificans DSM 20603, complete genomeBile acid:sodium symporter2e-65249
NC_012590:2755429:276720827672082768167960Corynebacterium aurimucosum ATCC 700975, complete genomeputative membrane protein2e-57223