Pre_GI: BLASTP Hits

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Query: NC_013716:1138441:1167336 Citrobacter rodentium ICC168, complete genome

Start: 1167336, End: 1168415, Length: 1080

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:1039500:1039534103953410406071074Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome(4Fe-4S)-binding protein3e-132471
NC_010814:190673:2019772019772029811005Geobacter lovleyi SZ, complete genome4Fe-4S ferredoxin, iron-sulfur binding domain protein4e-39162
NC_013385:1882549:1906910190691019079501041Ammonifex degensii KC4, complete genomeiron-sulfur cluster-binding protein6e-39161
NC_014222:186876:187719187719188441723Methanococcus voltae A3 chromosome, complete genome4Fe-4S ferredoxin iron-sulfur binding domain protein1e-1067.8