Pre_GI: BLASTP Hits

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Query: NC_013410:2691437:2693584 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2693584, End: 2694906, Length: 1323

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006138:1571878:1571878157187815739772100Desulfotalea psychrophila LSv54, complete genomesimilar to ICFG protein1e-26121
NC_013790:85889:1007111007111025821872Methanobrevibacter ruminantium M1 chromosome, complete genomeserine phosphatase4e-26119
NC_007512:944941:9756209756209775511932Pelodictyon luteolum DSM 273, complete genomeserine phosphatase1e-24114
NC_007512:1162949:1181383118138311833561974Pelodictyon luteolum DSM 273, complete genomeserine phosphatase1e-24114
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator3e-24113
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase9e-23108
NC_016010:637535:6375356375356396432109Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSerine phosphatase RsbU, regulator of sigma subunit4e-21103
NC_017059:2771085:2818972281897228212362265Rhodospirillum photometricum DSM 122, complete genomeSerine phosphatase RsbU regulator sigma subunit2e-21103
NC_017271:4193000:4216781421678142188412061Xanthomonas campestris pv. raphani 756C chromosome, completeIcfG protein2e-20100
NC_010688:673454:6734546734546755142061Xanthomonas campestris pv. campestris, complete genomeadenylate cyclase2e-20100
NC_007205:60069:6232362323645602238Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein1e-1895.1
NC_018643:754104:7541047541047561042001Alpha proteobacterium HIMB5 chromosome, complete genomeCHASE2 domain-containing protein,Stage II sporulation protein E (SpoIIE)1e-1894.4
NC_014976:2735423:2735423273542327364301008Bacillus subtilis BSn5 chromosome, complete genomeserine phosphatase9e-1891.7
NC_019896:3491000:3518845351884535198521008Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSigma factor sig regulation protein RsbU9e-1891.7
NC_016047:637778:6377786377786387851008Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completephosphoserine phosphatase RsbU1e-1791.3
NC_010814:2217153:2238961223896122422093249Geobacter lovleyi SZ, complete genomeputative phytochrome sensor protein1e-1791.3
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit1e-1790.9
NC_006582:883922:8843548843548853701017Bacillus clausii KSM-K16, complete genomeindirect positive regulator of sigma-B activity9e-1788.6
NC_007205:60069:6006960069622042136Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein1e-1687.8
NC_000911:1191445:1197262119726211991661905Synechocystis sp. PCC 6803, complete genomeICFG protein3e-1687
NC_017039:1192111:1197517119751711994211905Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeICFG protein3e-1687
NC_017052:1192099:1197505119750511994091905Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeICFG protein3e-1687
NC_017277:1192485:1197262119726211991661905Synechocystis sp. PCC 6803, complete genomeICFG protein3e-1687
NC_007205:60069:7711577115784611347Candidatus Pelagibacter ubique HTCC1062, complete genomeSigma factor sigB regulation protein3e-1686.7
NC_019757:3869047:3886897388689738885701674Cylindrospermum stagnale PCC 7417, complete genomeserine phosphatase RsbU, regulator of sigma subunit9e-1685.1
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase1e-1584.7
NC_018704:347948:3504003504003514101011Amphibacillus xylanus NBRC 15112, complete genomephosphoserine phosphatase RsbU2e-1584
NC_015565:2827444:2832013283201328332181206Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeprotein serine/threonine phosphatase3e-1583.6
NC_019673:6394319:6454744645474464562671524Saccharothrix espanaensis DSM 44229 complete genomeResponse regulator receiver modulated serine phosphatase5e-1582.8
NC_013510:5394432:5415681541568154194273747Thermomonospora curvata DSM 43183, complete genomemulti-sensor hybrid histidine kinase5e-1582.8
NC_013510:1849751:1868469186846918705502082Thermomonospora curvata DSM 43183, complete genomeputative PAS/PAC sensor protein6e-1582.4
NC_015671:3211972:3231317323131732335992283Cellvibrio gilvus ATCC 13127 chromosome, complete genomeputative PAS/PAC sensor protein3e-1480.5
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein5e-1479.3
NC_007604:2555000:2555003255500325563911389Synechococcus elongatus PCC 7942, complete genomeserine phosphatase5e-1479.3
NC_006576:1743500:1760393176039317617811389Synechococcus elongatus PCC 6301, complete genomehypothetical protein5e-1479.3
NC_012483:3144689:3149285314928531508861602Acidobacterium capsulatum ATCC 51196, complete genomeGAF/FHA/SpoE domain protein6e-1479
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit1e-1378.2
NC_004193:375416:6539466539466549591014Oceanobacillus iheyensis HTE831, complete genomeindirect positive regulator of sigma-B activity1e-1377.8
NC_014219:567033:5670335670335680461014Bacillus selenitireducens MLS10 chromosome, complete genomeprotein serine/threonine phosphatase2e-1377.4
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase3e-1376.6
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein5e-1375.9
NC_006510:1501487:1517620151762015203252706Geobacillus kaustophilus HTA426, complete genomehypothetical protein8e-1375.5
NC_016622:170000:1881271881271893501224Azospirillum lipoferum 4B, complete genomeputative two-component response regulator3e-1273.6
NC_012121:1578190:1595479159547915964801002Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative sigmaB regulation protein RsbU7e-1272.4
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein7e-1272.4
NC_021177:7870464:7884763788476378889084146Streptomyces fulvissimus DSM 40593, complete genomePAS/PAC sensor hybrid histidine kinase1e-1171.2
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein1e-1171.2
NC_012108:904260:9267529267529284521701Desulfobacterium autotrophicum HRM2, complete genomeRsbP2e-1170.9
NC_010162:2406976:2413825241382524162122388Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase3e-1170.1
NC_014377:1512217:151438815143881515113726Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein serine/threonine phosphatase5e-1169.3
NC_015573:569625:571222571222571938717Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeprotein serine/threonine phosphatase5e-1169.3
NC_013510:5394432:5411450541145054156014152Thermomonospora curvata DSM 43183, complete genomemulti-sensor signal transduction histidine kinase5e-1169.3
NC_013939:1688400:1701781170178117049903210Deferribacter desulfuricans SSM1, complete genomeserine phosphatase6e-1168.9
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein8e-1168.6
NC_010410:3166279:317913831791383180106969Acinetobacter baumannii AYE, complete genomeputative two-component response regulator1e-1068.2
NC_010611:679862:684391684391685359969Acinetobacter baumannii ACICU, complete genomeSerine phosphatase RsbU, regulator of sigma subunit1e-1068.2
NC_021177:7870464:7889172788917278902871116Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase2e-1067.4
NC_016622:527688:5342885342885354751188Azospirillum lipoferum 4B, complete genomeputative two-component response regulator2e-1067.4
NC_008009:2430509:2437727243772724387521026Acidobacteria bacterium Ellin345, complete genomeserine phosphatase2e-1067.4
NC_008148:1711679:1713663171366317147961134Rubrobacter xylanophilus DSM 9941, complete genomeputative PAS/PAC sensor protein2e-1067
NC_018750:3661243:3676167367616736773661200Streptomyces venezuelae ATCC 10712, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-1067
NC_013757:1438812:1469969146996914722812313Geodermatophilus obscurus DSM 43160, complete genomeputative PAS/PAC sensor protein3e-1066.6
NC_016943:2054688:2071109207110920728781770Blastococcus saxobsidens DD2, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-1066.6
NC_014392:2513529:2513529251352925146261098Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeputative PAS/PAC sensor protein4e-1066.2
NC_017955:3670670:3687246368724636883611116Modestobacter marinus, complete genomeSerine phosphatase RsbU, regulator of sigma subunit1e-0965.1
NC_007519:791679:7947047947047962121509Desulfovibrio alaskensis G20 chromosome, complete genomeserine phosphatase3e-0963.5
NC_015953:5444572:5460375546037554629992625Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein6e-0962.4
NC_013943:2857751:2872253287225328738151563Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeprotein serine/threonine phosphatase8e-0962
NC_017955:3057592:3078117307811730796641548Modestobacter marinus, complete genomePAS/PAC sensor protein8e-0962
NC_021177:3867439:3867439386743938691661728Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase1e-0861.6
NC_009664:570768:5737565737565755071752Kineococcus radiotolerans SRS30216, complete genomeputative PAS/PAC sensor protein1e-0861.6
NC_014831:2224733:224329822432982244104807Thermaerobacter marianensis DSM 12885 chromosome, complete genomeprotein serine/threonine phosphatase1e-0861.6
NC_017955:3731480:3749996374999637517651770Modestobacter marinus, complete genomehypothetical protein2e-0860.8
NC_016114:4333390:4349517434951743507971281Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePAS/PAC sensor protein2e-0860.8
NC_017955:3670670:3685066368506636871922127Modestobacter marinus, complete genometwo-component PAS/PAC sensor protein3e-0860.5
NC_009921:6483660:6510476651047665117141239Frankia sp. EAN1pec, complete genomeprotein serine/threonine phosphatase3e-0860.1
NC_010572:4024810:4037560403756040392991740Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein5e-0859.7
NC_009664:10718:2753127531288021272Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein6e-0859.3
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein9e-0858.5
NC_013510:4960500:4961196496119649624131218Thermomonospora curvata DSM 43183, complete genomeprotein serine/threonine phosphatase9e-0858.5
NC_013510:3065000:3084646308464630867122067Thermomonospora curvata DSM 43183, complete genomeprotein serine phosphatase with GAF(s) sensor(s)1e-0758.2
NC_013223:1763631:1767581176758117688101230Desulfohalobium retbaense DSM 5692, complete genomeputative PAS/PAC sensor protein1e-0758.2
NC_007333:1743890:1788670178867017905261857Thermobifida fusca YX, complete genomePAS:Protein phosphatase 2C-like:GAF1e-0758.2
NC_018750:5828000:5841875584187558445202646Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein2e-0757.8
NC_010572:4585500:4587521458752145893051785Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-0757
NC_011983:508287:5207735207735230972325Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein3e-0757
NC_004129:2201780:2203108220310822042921185Pseudomonas fluorescens Pf-5, complete genomeresponse regulator8e-0755.5
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase1e-0655.1
NC_014815:3005970:3022239302223930234501212Micromonospora sp. L5 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase1e-0654.7
NC_014165:2081914:210025221002522101181930Thermobispora bispora DSM 43833 chromosome, complete genomeprotein serine/threonine phosphatase1e-0654.7
NC_016582:7033000:7033222703322270352732052Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase1e-0654.7
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase2e-0654.3
NC_010162:2406976:241723024172302418192963Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase2e-0653.9
NC_017290:1096599:1117259111725911191661908Chlamydophila psittaci 08DC60 chromosome, complete genomeputative regulatory protein3e-0653.5
NC_010501:1868888:1868888186888818701261239Pseudomonas putida W619, complete genomeresponse regulator receiver modulated serine phosphatase6e-0652.8
NC_015656:4879904:4895368489536848964921125Frankia symbiont of Datisca glomerata chromosome, complete genomeprotein serine/threonine phosphatase5e-0652.8
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism5e-0652.8
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase5e-0652.8
NC_003155:365500:3792203792203804581239Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase4e-0652.8
NC_003888:8569962:8581406858140685831091704Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-0552