Pre_GI: BLASTP Hits

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Query: NC_013410:1651000:1677813 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1677813, End: 1678472, Length: 660

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021184:3497000:351998635199863520639654Desulfotomaculum gibsoniae DSM 7213, complete genomehypothetical protein9e-74276
NC_015437:2354429:237282123728212373492672Selenomonas sputigena ATCC 35185 chromosome, complete genomevon Willebrand factor type A8e-66249
NC_013192:305478:308716308716309450735Leptotrichia buccalis DSM 1135, complete genomevon Willebrand factor type A5e-49194
NC_013790:1081757:108281110828111083497687Methanobrevibacter ruminantium M1 chromosome, complete genomehypothetical protein5e-35147
NC_013517:825100:845487845487846188702Sebaldella termitidis ATCC 33386, complete genomevon Willebrand factor type A1e-33143
NC_012030:141719:152764152764153393630Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein7e-33140
NC_007512:944941:961389961389962036648Pelodictyon luteolum DSM 273, complete genomehypothetical protein1e-32139
NC_014814:4809607:481755248175524818196645Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein3e-31135
NC_013665:918313:960638960638961297660Methanocella paludicola SANAE, complete genomehypothetical protein2e-28125
NC_007796:817404:830793830793831515723Methanospirillum hungatei JF-1, complete genomehypothetical protein2e-25115
NC_013158:1686239:172743217274321728067636Halorhabdus utahensis DSM 12940, complete genomevon Willebrand factor type A2e-25115
NC_014033:1088500:109680410968041097382579Prevotella ruminicola 23 chromosome, complete genomehypothetical protein1e-1273.6
NC_014814:4809607:483179448317944832018225Mycobacterium sp. Spyr1 chromosome, complete genome2e-1065.9