Pre_GI: BLASTP Hits

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Query: NC_013410:1651000:1658840 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1658840, End: 1660768, Length: 1929

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013895:1203000:1209865120986512117991935Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein2e-60234
NC_010617:774914:8013438013438033161974Kocuria rhizophila DC2201, complete genomehypothetical protein9e-38158
NC_020410:3801583:3811619381161938135621944Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completePutative orphan protein8e-35149
NC_007514:335085:3422393422393441581920Chlorobium chlorochromatii CaD3, complete genomehypothetical protein8e-30132
NC_013203:202008:2049412049412069141974Atopobium parvulum DSM 20469, complete genomehypothetical protein2e-1481.3