Pre_GI: BLASTP Hits

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Query: NC_013410:1152188:1162090 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1162090, End: 1162326, Length: 237

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014006:3124818:313237831323783132620243Sphingobium japonicum UT26S chromosome 1, complete genomeXre-family transcriptional regulator1e-0858.5
NC_013739:5535945:555957955595795559845267Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family3e-0857.4
NC_014216:2860342:286928428692842869517234Desulfurivibrio alkaliphilus AHT2 chromosome, complete genometranscriptional regulator, XRE family5e-0753.1
NC_002936:1395432:140162414016241401842219Dehalococcoides ethenogenes 195, complete genomeDNA-binding protein1e-0652
NC_013739:717352:726063726063726323261Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family1e-0652
NC_008322:373531:373304373304373534231Shewanella sp. MR-7, complete genometranscriptional regulator, XRE family2e-0651.6
NC_013739:2106662:211189521118952112176282Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family2e-0651.2