Pre_GI: BLASTP Hits

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Query: NC_013316:2033906:2077802 Clostridium difficile R20291, complete genome

Start: 2077802, End: 2079103, Length: 1302

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008577:3485878:3502723350272335040751353Shewanella sp. ANA-3 chromosome 1, complete sequencemulti antimicrobial extrusion protein MatE5e-39162
NC_014965:670115:6874306874306887611332Vibrio vulnificus MO6-24/O chromosome I, complete sequencemulti antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps1e-35151
NC_004459:1679335:1696608169660816979391332Vibrio vulnificus CMCP6 chromosome I, complete sequenceNa+-driven multidrug efflux pump1e-35151
NC_005139:2731623:2732619273261927339531335Vibrio vulnificus YJ016 chromosome I, complete sequenceNa+-driven multidrug efflux pump2e-35150
NC_018604:1534074:1536820153682015381991380Brachyspira pilosicoli WesB complete genomeputative Na+ driven multidrug efflux pump4e-33142
NC_015275:3761889:3765361376536137667611401Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein4e-32139
NC_013517:2815482:2816247281624728176141368Sebaldella termitidis ATCC 33386, complete genomeMATE efflux family protein1e-31137
NC_015275:3243689:3243689324368932450681380Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein1e-31137
NC_015589:2100175:2125207212520721265981392Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeMATE efflux family protein3e-31136
NC_021184:3841172:3866836386683638682031368Desulfotomaculum gibsoniae DSM 7213, complete genomeputative efflux protein, MATE family7e-31135
NC_015275:882022:8923408923408937281389Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein3e-29130
NC_014150:1123570:1139204113920411405081305Brachyspira murdochii DSM 12563 chromosome, complete genomemulti antimicrobial extrusion protein MatE3e-29129
NC_015676:1736375:1740095174009517414411347Methanosalsum zhilinae DSM 4017 chromosome, complete genomeMATE efflux family protein5e-28125
NC_009698:2171151:2193841219384121951421302Clostridium botulinum A str. Hall chromosome, complete genomeMATE efflux family protein5e-28125
NC_014624:2569604:2569604256960425709261323Eubacterium limosum KIST612 chromosome, complete genomeMATE efflux family protein7e-27122
NC_003552:2502689:2544485254448525458911407Methanosarcina acetivorans C2A, complete genomeDNA damage-inducible protein1e-26121
NC_017378:1175639:1182468118246811838471380Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein9e-26118
NC_018604:838932:8409738409738423671395Brachyspira pilosicoli WesB complete genomeMATE efflux family protein1e-25117
NC_015275:566000:5771625771625785261365Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein3e-25116
NC_017218:1166844:1176145117614511775271383Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeMATE efflux family protein5e-25115
NC_009615:1354122:1371319137131913726681350Parabacteroides distasonis ATCC 8503 chromosome, complete genomeNa+-driven multidrug efflux pump7e-25115
NC_017379:1233482:1240315124031512416941380Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein7e-25115
NC_017219:1830353:1839642183964218410241383Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein1e-24114
NC_011593:1830500:1839852183985218412341383Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,MATE efflux family protein1e-24114
NC_015500:159199:1734071734071747291323Treponema brennaborense DSM 12168 chromosome, complete genomemulti antimicrobial extrusion protein MatE3e-24113
NC_011333:1236730:1237907123790712392861380Helicobacter pylori G27 chromosome, complete genomehypothetical protein4e-24112
NC_013171:342714:3427143427143440691356Anaerococcus prevotii DSM 20548, complete genomeMATE efflux family protein1e-23111
NC_003413:694475:7112757112757126601386Pyrococcus furiosus DSM 3638, complete genomehypothetical protein2e-23110
NC_014624:287500:2966892966892980411353Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein9e-23108
NC_012780:284336:2876082876082889481341Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencemultidrug resistance protein, MATE family2e-22107
NC_016048:2907702:3001860300186030032481389Oscillibacter valericigenes Sjm18-20, complete genomeMatE efflux family protein2e-22107
NC_019908:1296870:1298452129845212998071356Brachyspira pilosicoli P43/6/78 chromosome, complete genomecation efflux protein3e-22107
NC_014330:1957725:1969110196911019704651356Brachyspira pilosicoli 95/1000 chromosome, complete genomecation efflux protein3e-22106
NC_009089:478328:5152855152855166371353Clostridium difficile 630, complete genomeputative drug/sodium antiporter5e-22105
NC_015913:1248000:1248226124822612495601335Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeMATE efflux family protein5e-22105
NC_014364:773500:7875177875177888571341Spirochaeta smaragdinae DSM 11293 chromosome, complete genomemulti antimicrobial extrusion protein MatE2e-21103
NC_013517:1916020:1936256193625619376231368Sebaldella termitidis ATCC 33386, complete genomeMATE efflux family protein4e-21102
NC_003366:1013773:1013773101377310151281356Clostridium perfringens str. 13, complete genomehypothetical protein1e-20101
NC_019968:1084288:1104070110407011054221353Prevotella dentalis DSM 3688 chromosome 2, complete sequenceputative efflux protein, MATE family2e-20100
NC_014376:1879000:1891482189148218928281347Clostridium saccharolyticum WM1 chromosome, complete genomeMATE efflux family protein5e-2099.4
NC_016894:3935161:3952042395204239535081467Acetobacterium woodii DSM 1030 chromosome, complete genomeNa+ driven multidrug efflux pump1e-1997.8
NC_015311:2626850:2644735264473526461741440Prevotella denticola F0289 chromosome, complete genomeMATE domain-containing protein1e-1997.8
NC_016048:1438721:1466945146694514683001356Oscillibacter valericigenes Sjm18-20, complete genomeMatE efflux family protein2e-1997.4
NC_014836:2581939:2602086260208626034381353Desulfurispirillum indicum S5 chromosome, complete genomemulti antimicrobial extrusion protein MatE2e-1997.4
NC_015500:1236874:1238707123870712400561350Treponema brennaborense DSM 12168 chromosome, complete genomeMATE efflux family protein2e-1997.1
NC_015977:2189115:2206567220656722079341368Roseburia hominis A2-183 chromosome, complete genomehypothetical protein9e-1995.1
NC_002950:1511955:1529998152999815313171320Porphyromonas gingivalis W83, complete genomeMATE efflux family protein1e-1894.7
NC_002950:879930:8843068843068856641359Porphyromonas gingivalis W83, complete genomeMATE efflux family protein1e-1894.7
NC_010162:7571525:7589605758960575909691365Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-1790.5
NC_015577:3589884:3620176362017636214981323Treponema azotonutricium ZAS-9 chromosome, complete genomeNa+ driven multidrug efflux pump2e-1790.5
NC_019908:1043401:1061875106187510632151341Brachyspira pilosicoli P43/6/78 chromosome, complete genomeNa+-driven multidrug efflux pump3e-1790.1
NC_015500:484984:5071955071955087481554Treponema brennaborense DSM 12168 chromosome, complete genomeMATE efflux family protein3e-1790.1
NC_018607:1865972:1882524188252418838641341Brachyspira pilosicoli B2904 chromosome, complete genomeNa+-driven multidrug efflux pump7e-1789
NC_009718:799431:8056918056918070551365Fervidobacterium nodosum Rt17-B1, complete genomeMATE efflux family protein6e-1789
NC_014364:394899:4293224293224306801359Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeMATE efflux family protein8e-1788.6
NC_019962:1676632:1699026169902617005071482Natrinema pellirubrum DSM 15624, complete genomeputative efflux protein, MATE family1e-1687.8
NC_014376:1217000:1251727125172712530641338Clostridium saccharolyticum WM1 chromosome, complete genomemulti antimicrobial extrusion protein MatE2e-1687.4
NC_016048:2907702:3015513301551330168471335Oscillibacter valericigenes Sjm18-20, complete genomeMatE efflux family protein2e-1687
NC_013887:1424000:1438429143842914397871359Methanocaldococcus sp. FS406-22 chromosome, complete genomeMATE efflux family protein2e-1687
NC_015416:2292555:2311041231104123124351395Methanosaeta concilii GP-6 chromosome, complete genomeMATE efflux family protein3e-1686.7
NC_009615:1601170:1601170160117016025491380Parabacteroides distasonis ATCC 8503 chromosome, complete genometransmembrane cation efflux pump3e-1686.7
NC_016633:2239413:2255109225510922564791371Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative efflux protein, MATE family5e-1685.9
NC_020156:1220755:1220755122075512221221368Nonlabens dokdonensis DSW-6, complete genomeputative Na+-driven multidrug efflux pump, MatE family4e-1582.8
NC_019962:1750497:1763099176309917645831485Natrinema pellirubrum DSM 15624, complete genomeputative efflux protein, MATE family5e-1582.8
NC_015577:676453:6764536764536778891437Treponema azotonutricium ZAS-9 chromosome, complete genomeMATE efflux family protein6e-1582.4
NC_016642:3554000:3580285358028535816911407Pseudovibrio sp. FO-BEG1 chromosome, complete genomeMulti antimicrobial extrusion protein MatE7e-1582
NC_014624:1349950:1367564136756413689161353Eubacterium limosum KIST612 chromosome, complete genomeNa+ driven multidrug efflux pump1e-1481.6
NC_015164:2111426:2116408211640821177631356Bacteroides salanitronis DSM 18170 chromosome, complete genomeMATE efflux family protein2e-1480.5
NC_014976:684000:6901346901346914771344Bacillus subtilis BSn5 chromosome, complete genomeNa+-driven multidrug efflux pump4e-1479.7
NC_015737:1385585:1406049140604914074491401Clostridium sp. SY8519, complete genomehypothetical protein4e-1479.7
NC_019962:2129393:2151904215190421533881485Natrinema pellirubrum DSM 15624, complete genomeputative efflux protein, MATE family8e-1478.6
NC_015578:2727684:2731914273191427332871374Treponema primitia ZAS-2 chromosome, complete genomeMATE efflux family protein1e-1378.2
NC_015496:1288377:1311639131163913129851347Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeMATE efflux family protein1e-1378.2
NC_019978:922978:9229789229789243481371Halobacteroides halobius DSM 5150, complete genomeputative efflux protein, MATE family2e-1377.8
NC_014732:141000:1419871419871434591473Halogeometricum borinquense DSM 11551 plasmid pHBOR04, completeefflux protein, MATE family2e-1377.4
NC_017238:482222:4950084950084963721365Borrelia afzelii PKo chromosome, complete genomeMATE efflux family protein4e-1376.3
NC_008277:485299:4964494964494978131365Borrelia afzelii PKo, complete genomehypothetical protein4e-1376.3
NC_015921:481532:4914454914454928091365Borrelia bissettii DN127 chromosome, complete genomeMATE efflux family protein5e-1375.9
NC_017095:269165:2844172844172858351419Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeputative efflux protein, MATE family6e-1375.9
NC_013192:63111:8642786427877461320Leptotrichia buccalis DSM 1135, complete genomeMATE efflux family protein2e-1274.3
NC_006156:484951:4949224949224962801359Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein2e-1274.3
NC_014364:4488875:4526948452694845283091362Spirochaeta smaragdinae DSM 11293 chromosome, complete genomemulti antimicrobial extrusion protein MatE2e-1273.9
NC_007681:600187:6068146068146082051392Methanosphaera stadtmanae DSM 3091, complete genomepredicted Na+-driven multidrug efflux pump3e-1273.6
NC_015578:1430112:1435667143566714371271461Treponema primitia ZAS-2 chromosome, complete genomeMATE efflux family protein5e-1272.8
NC_012563:2203037:2219890221989022212121323Clostridium botulinum A2 str. Kyoto, complete genomeMATE efflux family protein4e-1272.8
NC_009495:2056546:2073399207339920747211323Clostridium botulinum A str. ATCC 3502 chromosome, complete genomedrug/sodium antiporter4e-1272.8
NC_009697:1985187:2002040200204020033621323Clostridium botulinum A str. ATCC 19397 chromosome, completeMATE efflux family protein4e-1272.8
NC_009698:1985404:2002257200225720035791323Clostridium botulinum A str. Hall chromosome, complete genomeMATE efflux family protein4e-1272.8
NC_010516:2064027:2081583208158320829051323Clostridium botulinum B1 str. Okra, complete genomeMATE efflux family protein4e-1272.8
NC_009699:2116500:2131651213165121329731323Clostridium botulinum F str. Langeland chromosome, complete genomeMATE efflux family protein4e-1272.8
NC_017297:2114222:2131755213175521330771323Clostridium botulinum F str. 230613 chromosome, complete genomeMATE efflux family protein4e-1272.8
NC_010506:5195000:5215531521553152168861356Shewanella woodyi ATCC 51908, complete genomeMATE efflux family protein1e-1171.6
NC_010520:2171584:2191093219109321924151323Clostridium botulinum A3 str. Loch Maree, complete genomeMATE efflux family protein2e-1170.9
NC_012225:2247796:2247796224779622491931398Brachyspira hyodysenteriae WA1, complete genomeNorM, Na+-driven multidrug efflux pump2e-1170.9
NC_016901:2661971:2678351267835126799761626Shewanella baltica OS678 chromosome, complete genomemulti antimicrobial extrusion protein MatE3e-1170.1
NC_014328:2990790:2993767299376729951281362Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Na+-driven efflux pump3e-1170.1
NC_015977:3011177:3018057301805730194181362Roseburia hominis A2-183 chromosome, complete genomehypothetical protein3e-1170.1
NC_011244:497212:5126435126435140011359Borrelia recurrentis A1, complete genomehypothetical protein3e-1170.1
NC_001318:479709:4925884925884939521365Borrelia burgdorferi B31, complete genomehypothetical protein3e-1170.1
NC_011728:477439:4886834886834900471365Borrelia burgdorferi ZS7, complete genomehypothetical protein3e-1170.1
NC_013174:73948:9487594875964431569Jonesia denitrificans DSM 20603, complete genomeMATE efflux family protein4e-1169.7
NC_014219:2976642:2994760299476029961001341Bacillus selenitireducens MLS10 chromosome, complete genomeMATE efflux family protein6e-1169.3
NC_009092:521519:5275115275115288781368Shewanella loihica PV-4, complete genomeMATE efflux family protein7e-1168.9
NC_009052:2512373:2512933251293325145731641Shewanella baltica OS155, complete genomemulti antimicrobial extrusion protein MatE7e-1168.9
NC_004347:718091:7190847190847204421359Shewanella oneidensis MR-1, complete genomeMATE efflux family protein9e-1168.6
NC_011753:206178:2316862316862331161431Vibrio splendidus LGP32 chromosome 1, complete genomeMultidrug efflux pump protein9e-1168.6
NC_007643:791500:8007998007998021901392Rhodospirillum rubrum ATCC 11170, complete genomeMulti antimicrobial extrusion protein MatE9e-1168.6
NC_015977:2807782:2811790281179028132171428Roseburia hominis A2-183 chromosome, complete genomeMATE family multidrug resistance protein9e-1168.6
NC_017243:3093393:3108831310883131102281398Brachyspira intermedia PWS/A chromosome, complete genomeNorM, Na+-driven multidrug efflux pump9e-1168.6
NC_010184:3213347:3220826322082632222441419Bacillus weihenstephanensis KBAB4, complete genomemulti antimicrobial extrusion protein MatE8e-1168.6
NC_014541:475350:5317815317815331271347Ferrimonas balearica DSM 9799 chromosome, complete genomeMATE efflux family protein1e-1067.8
NC_020911:1549065:1550919155091915522261308Octadecabacter antarcticus 307, complete genomemultidrug resistance protein NorM3e-1066.6
NC_013923:45876:6275562755642571503Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequenceMATE efflux family protein6e-1065.9
NC_009052:4335754:4335754433575443371211368Shewanella baltica OS155, complete genomeMATE efflux family protein9e-1065.1
NC_008609:2840249:2853862285386228552651404Pelobacter propionicus DSM 2379, complete genomeMATE efflux family protein1e-0965.1
NC_013416:939668:9435589435589449551398Aggregatibacter actinomycetemcomitans D11S-1, complete genomemultidrug resistance protein MdtK (Multidrug-efflux transporter)2e-0964.3
NC_014328:2467239:2470621247062124719821362Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Na+-driven multidrug efflux pump2e-0963.9
NC_010673:479552:4979074979074992531347Borrelia hermsii DAH, complete genomeNa+ driven multidrug efflux pump2e-0963.9
NC_008700:3692333:3706716370671637080831368Shewanella amazonensis SB2B, complete genomeMATE efflux family protein4e-0963.2
NC_007796:2286713:2289246228924622906131368Methanospirillum hungatei JF-1, complete genomeMATE efflux family protein4e-0963.2
NC_014408:682689:6856696856696870211353Methanothermobacter marburgensis str. Marburg chromosome, completeNa+-driven multidrug efflux pump5e-0962.8
NC_015152:1341353:1347180134718013485201341Spirochaeta sp. Buddy chromosome, complete genomeMATE efflux family protein7e-0962.4
NC_014500:3097362:3104536310453631059151380Dickeya dadantii 3937 chromosome, complete genomeNa+ driven multidrug efflux pump1e-0861.6
NC_013201:145973:1470801470801484921413Halomicrobium mukohataei DSM 12286 plasmid pHmuk01, completeMATE efflux family protein1e-0861.2
NC_014377:480158:5245855245855259761392Thermosediminibacter oceani DSM 16646 chromosome, complete genomeMATE efflux family protein1e-0861.2
NC_015954:2405527:2405527240552724069781452Halophilic archaeon DL31 chromosome, complete genomeMATE efflux family protein4e-0859.7
NC_018643:641360:6576496576496590191371Alpha proteobacterium HIMB5 chromosome, complete genomeefflux protein, MATE family7e-0858.9
NC_014761:1981435:1985536198553619868161281Oceanithermus profundus DSM 14977 chromosome, complete genomemate efflux family protein8e-0858.9
NC_007759:2146254:2161721216172121630821362Syntrophus aciditrophicus SB, complete genomeNa+ driven multidrug efflux pump1e-0758.2
NC_013967:1687825:1691338169133816928041467Haloferax volcanii DS2 chromosome, complete genomemulti antimicrobial extrusion family drug/sodium antiporter2e-0757.4
NC_020291:397696:4002504002504016321383Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeMATE efflux family protein3e-0757
NC_020181:473170:4717344717344731731440Enterobacter aerogenes EA1509E, complete genomewidely conserved hypothetical transmembrane protein with duf0131e-0655.1
NC_009792:859228:8577928577928592311440Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0655.1
NC_014033:1564733:1578215157821515795761362Prevotella ruminicola 23 chromosome, complete genomeputative MATE efflux protein1e-0654.7
NC_015519:197836:2352942352942366761383Tepidanaerobacter sp. Re1 chromosome, complete genomeMATE efflux family protein1e-0654.7
NC_012471:51305:6667366673679831311Streptococcus equi subsp. equi 4047, complete genomemulti antimicrobial extrusion (MATE) family transporter2e-0653.9
NC_008710:488815:4953954953954967831389Borrelia turicatae 91E135, complete genomeNa+ driven multidrug efflux pump2e-0653.9
NC_016631:2112175:2113886211388621153041419Granulicella mallensis MP5ACTX8 chromosome, complete genomeMATE efflux family protein2e-0653.9
UCMB5137:1676568:1692258169225816936101353Bacillus atrophaeus UCMB-5137damage inducible, Na+ driven multidrug efflux pump3e-0653.9
NC_008322:641197:6422776422776436351359Shewanella sp. MR-7, complete genomeMATE efflux family protein5e-0652.8
NC_013895:1332832:1339746133974613409031158Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeiron dependent repressor, N-terminal DNA binding domain protein5e-0652.8