Pre_GI: BLASTP Hits

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Query: NC_012943:830000:836154 Mycobacterium tuberculosis KZN 1435 chromosome, complete genome

Start: 836154, End: 836681, Length: 528

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: M. tuberculosis strain KZN 1435 was isolated from a patient in KwaZulu-Natal, South Africa. This strain is multidrug-resistant (resistant to isoniazid and rifampin). This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. This species is responsible for more morbidity in humans than any other bacterial disease. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. The envelope contains the typical polypeptide layer, the peptidoglycan layer, and free lipids. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. These fatty acid-carbohydrate complexes inhibit phago-lysosome fusion and are often considered to be indicators of virulent strains. The cell envelope also includes adhesins and aggressions, but does not contain any known toxins. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:829444:835652835652836179528Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein1e-66251
NC_016804:831500:836898836898837425528Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein1e-66251
NC_016768:830000:836158836158836685528Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein1e-66251
NC_002755:831397:837343837343837870528Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein1e-66251
NC_009565:833076:839023839023839550528Mycobacterium tuberculosis F11, complete genomehypothetical protein1e-66251
NC_002945:831029:836978836978837505528Mycobacterium bovis AF2122/97, complete genomehypothetical protein1e-66251
NC_012207:831030:836979836979837506528Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein1e-66251
NC_008769:860670:866619866619867146528Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein1e-66251
NC_016948:419500:4369964369964393292334Mycobacterium intracellulare MOTT-64 chromosome, complete genomeATP-dependent rna helicase, dead/deah box family protein8e-1063.2