Pre_GI: BLASTP Hits

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Query: NC_012917:833721:843070 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 843070, End: 843651, Length: 582

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006138:2630338:2637564263756426387331170Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-46185
NC_014655:1098428:110082411008241101390567Leadbetterella byssophila DSM 17132 chromosome, complete genomehypothetical protein5e-1477.8
NC_012881:334250:344775344775345344570Desulfovibrio salexigens DSM 2638, complete genomehypothetical protein1e-1169.7
NC_006350:595893:623813623813624394582Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein4e-0754.7