Pre_GI: BLASTP Hits

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Query: NC_012917:569856:575169 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 575169, End: 575996, Length: 828

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014323:625155:633230633230634102873Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein3e-81301
NC_003295:3421520:342479534247953425697903Ralstonia solanacearum GMI1000, complete genomehypothetical protein9e-71266
NC_013282:3719500:373019237301923731031840Cronobacter turicensis, complete genomehypothetical protein5e-57221
NC_016803:198178:232087232087232959873Desulfovibrio desulfuricans ND132 chromosome, complete genomehypothetical protein1e-39163
NC_017192:1137724:115069211506921151513822Arcobacter sp. L, complete genomehypothetical protein1e-33143
NC_014166:2055984:206679720667972067624828Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeputative lipoprotein9e-30130