Pre_GI: BLASTP Hits

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Query: NC_012917:4646491:4664312 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4664312, End: 4665412, Length: 1101

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016514:2647984:2671812267181226729241113Enterobacter cloacae EcWSU1 chromosome, complete genomelinoleoyl-CoA desaturase5e-93341
NC_013282:2582720:2606501260650126075621062Cronobacter turicensis, complete genomehypothetical protein2e-86319
NC_012917:4646491:4665409466540946665481140Pectobacterium carotovorum subsp. carotovorum PC1, complete genomefatty acid desaturase9e-82303
NC_018721:2872780:2890826289082628919201095Psychroflexus torquis ATCC 700755 chromosome, complete genomefatty acid desaturase DesA-like protein2e-1686.7
NC_015177:124000:1273641273641284611098Pedobacter saltans DSM 12145 chromosome, complete genomefatty acid desaturase8e-1581.6