Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:3241196:3280586 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3280586, End: 3280720, Length: 135

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014306:4376012:4404650440465044057561107Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein3e-1373.9
NC_009656:6224221:6240477624047762415531077Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein5e-0959.7
NC_016830:5994494:600992960099296010915987Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein2e-0858.2
NC_011206:123791:1306071306071318151209Acidithiobacillus ferrooxidans ATCC 53993, complete genomehypothetical protein4e-0753.5