Pre_GI: BLASTP Hits

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Query: NC_012917:2641000:2664045 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2664045, End: 2666159, Length: 2115

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012912:4071859:4079448407944840812051758Dickeya zeae Ech1591, complete genomeHemolysin-type calcium-binding region1e-57224
NC_009050:212270:2122702122702203068037Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceputative outer membrane adhesin like proteiin1e-0759.3
NC_012912:4071859:408120940812094081574366Dickeya zeae Ech1591, complete genomehypothetical protein1e-0759.3
NC_007494:621673:6224986224986241681671Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceHemolysin-type calcium-binding region, RTX2e-0655.5
NC_014166:1424754:14592531459253147046011208Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehemolysin-type calcium-binding region2e-0655.1
NC_011894:585637:6184106184106207042295Methylobacterium nodulans ORS 2060, complete genomeproprotein convertase P2e-0654.7
NC_010278:1467146:1478069147806914812273159Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,RTX-III toxin determinant A from serotype 85e-0653.9