Pre_GI: BLASTP Hits

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Query: NC_012917:1923059:1927062 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1927062, End: 1927841, Length: 780

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015424:525039:525039525039525986948Aeromonas veronii B565 chromosome, complete genomeSanA protein2e-45182
NC_008570:546736:5467365467365477611026Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomesanA protein5e-45181
NC_009348:4011160:401116040111604012059900Aeromonas salmonicida subsp. salmonicida A449, complete genomeSanA protein7e-45180
NC_012225:1213421:122800812280081228829822Brachyspira hyodysenteriae WA1, complete genomehypothetical protein5e-40164
NC_017243:2383577:239709623970962397917822Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein3e-39161
NC_014150:2501299:251841425184142519220807Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF2181e-38159
NC_015160:3448570:346465134646513465334684Odoribacter splanchnicus DSM 20712 chromosome, complete genomehypothetical protein1e-37156
NC_002940:1065246:107250310725031073195693Haemophilus ducreyi 35000HP, complete genomeSanA protein2e-37155
NC_010655:2065567:207210520721052072758654Akkermansia muciniphila ATCC BAA-835, complete genomeprotein of unknown function DUF2182e-30132
NC_014033:164670:1747771747771761201344Prevotella ruminicola 23 chromosome, complete genomehypothetical protein3e-27122
NC_013947:4979000:498271749827174983394678Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein1e-22107
NC_017045:631761:635472635472636044573Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,7e-21100
NC_014738:469945:473656473656474228573Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,hypothetical protein7e-21100
NC_020125:1237536:125427912542791254890612Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein1e-20100
NC_012563:811993:811993811993812661669Clostridium botulinum A2 str. Kyoto, complete genomeputative SanA protein6e-1994.7
NC_015275:3846260:386769438676943868395702Clostridium lentocellum DSM 5427 chromosome, complete genomeprotein of unknown function DUF2187e-1580.9
NC_010320:671699:671699671699672277579Thermoanaerobacter sp. X514 chromosome, complete genomehypothetical protein7e-0651.2
NC_011725:2949519:296654729665472967179633Bacillus cereus B4264 chromosome, complete genomehypothetical protein8e-0651.2