Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1886814 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1886814, End: 1887053, Length: 240

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002797:1960000:196281219628121963051240Escherichia coli NA114, complete genomehypothetical protein7e-24108
NC_015311:1612366:161283216128321613062231Prevotella denticola F0289 chromosome, complete genomeputative metal-binding protein2e-1684.7
NC_004663:1409462:142714414271441427344201Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein3e-1063.9