Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:1840172:1846482 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1846482, End: 1846946, Length: 465

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:3269469:327511032751103275580471Serratia sp. AS12 chromosome, complete genometranscription activator effector binding protein3e-28124
NC_009832:3313058:332560133256013326071471Serratia proteamaculans 568, complete genometranscription activator effector binding2e-22104
NC_015663:4950000:495312449531244953597474Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA gyrase inhibitor5e-1786.7
NC_009436:2776410:278195827819582782431474Enterobacter sp. 638, complete genomeDNA gyrase inhibitor9e-1785.9
NC_011740:2072173:207896220789622079429468Escherichia fergusonii ATCC 35469, complete genomeDNA gyrase inhibitor; in high copy protects cells from replication inhibitor MccB17; SOS induced; blocks MccB17 export (SbmC protein)1e-1685.1
NC_014306:3210311:321341032134103213877468Erwinia billingiae Eb661, complete genomeDNA gyrase inhibitor7e-1682.8
NC_010102:931055:952498952498952965468Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-1682.4
NC_013364:2612822:261407926140792614552474Escherichia coli O111:H- str. 11128, complete genomeDNA gyrase inhibitor SbmC7e-1579.7
NC_012881:2957309:296953829695382969999462Desulfovibrio salexigens DSM 2638, complete genometranscription activator effector binding3e-0857.4
NC_004663:2935060:295745829574582958405948Bacteroides thetaiotaomicron VPI-5482, complete genometranscriptional regulator1e-0652.4