Pre_GI: BLASTP Hits

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Query: NC_012854:1:14930 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,

Start: 14930, End: 16561, Length: 1632

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014152:421481:4419834419834434071425Thermincola sp. JR, complete genomeRadical SAM domain protein1e-94347
NC_020387:796253:8035378035378047661230Dehalococcoides mccartyi BTF08, complete genomecobalamin-binding domain-containing protein2e-77290
NC_014314:1148000:1160910116091011627151806Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completehypothetical protein7e-46185
NC_010337:616304:6441276441276459321806Heliobacterium modesticaldum Ice1, complete genomehypothetical protein6e-44179
NC_014734:677103:6963976963976982231827Paludibacter propionicigenes WB4 chromosome, complete genomehypothetical protein1e-39165
NC_012918:356019:3691563691563707691614Geobacter sp. M21 chromosome, complete genomeradical SAM protein1e-39164
NC_014364:2111685:2121424212142421232981875Spirochaeta smaragdinae DSM 11293 chromosome, complete genomehypothetical protein1e-37158
NC_015577:3244857:3257546325754632595011956Treponema azotonutricium ZAS-9 chromosome, complete genomehypothetical protein4e-32139
NC_002578:1434396:1435789143578914370661278Thermoplasma acidophilum DSM 1728, complete genomehypothetical protein3e-1997.1
NC_014393:4323368:433133543313354332315981Clostridium cellulovorans 743B chromosome, complete genomeradical SAM domain-containing protein2e-1067.8