Pre_GI: BLASTP Hits

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Query: NC_012848:320883:335279 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,

Start: 335279, End: 335950, Length: 672

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010321:2319820:233693123369312337608678Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeCrp/FNR family transcriptional regulator1e-0963.2
NC_014964:2301835:231894623189462319623678Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completecyclic nucleotide-binding protein1e-0963.2
NC_014209:2257316:228113822811382281815678Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,transcriptional regulator, Crp/Fnr family4e-0961.6
NC_019902:1061432:106493510649351065654720Thioalkalivibrio nitratireducens DSM 14787, complete genomecAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase1e-0860.1
NC_000911:3478000:348256834825683483284717Synechocystis sp. PCC 6803, complete genomeDNR protein4e-0858.2
NC_017039:3474500:347921234792123479928717Synechocystis sp. PCC 6803 substr. PCC-P, complete genometranscriptional regulator DNR4e-0858.2
NC_017052:3474500:347920134792013479917717Synechocystis sp. PCC 6803 substr. PCC-N, complete genometranscriptional regulator DNR4e-0858.2
NC_017277:3475500:348020134802013480917717Synechocystis sp. PCC 6803, complete genometranscriptional regulator DNR4e-0858.2
NC_015681:102000:116429116429117118690Thermodesulfatator indicus DSM 15286 chromosome, complete genomeCrp/Fnr family transcriptional regulator2e-0755.8
NC_012440:1405879:141651514165151417198684Persephonella marina EX-H1, complete genometranscriptional regulator1e-0653.5
NC_011894:5468500:546963554696355470327693Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family1e-0653.1
NC_007964:2152000:216817021681702168865696Nitrobacter hamburgensis X14, complete genometranscriptional regulator, Crp/Fnr family3e-0652