Pre_GI: BLASTP Hits

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Query: NC_012808:4078459:4084401 Methylobacterium extorquens AM1, complete genome

Start: 4084401, End: 4085669, Length: 1269

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007614:1662874:1671987167198716732401254Nitrosospira multiformis ATCC 25196 chromosome 1, completePhage terminase, large subunit, PBSX1e-152539
NC_010172:2722000:2733710273371027347381029Methylobacterium extorquens PA1, complete genometerminase large subunit1e-116419
NC_015563:4583906:4591526459152645928811356Delftia sp. Cs1-4 chromosome, complete genomephage terminase, large subunit, PBSX family1e-104380
NC_002946:1020175:1060926106092610622001275Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein, putative phage associated protein1e-90333
NC_017511:522679:5226795226795239531275Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative phage associated protein5e-90331
NC_011035:541560:5443565443565456301275Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative phage associated protein5e-90331
NC_011369:1135592:1154297115429711555711275Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, completephage terminase, large subunit, PBSX family4e-70265
CU928145:2655989:2686398268639826878101413Escherichia coli 55989 chromosome, complete genomeTerminase large subunit2e-56219
NC_011748:2655989:2686398268639826878101413Escherichia coli 55989, complete genomeTerminase large subunit2e-56219
NC_012846:929570:9499459499459512791335Bartonella grahamii as4aup, complete genomephage terminase, large subunit3e-53209
NC_010002:2110953:2131018213101821323191302Delftia acidovorans SPH-1, complete genomephage terminase, large subunit, PBSX family4e-51202
NC_005956:1616804:1616804161680416180121209Bartonella henselae str. Houston-1, complete genomephage related protein5e-51202
NC_008783:222000:2250082250082262161209Bartonella bacilliformis KC583, complete genomeputative phage terminase, large subunit, PBSX family6e-51201
NC_014932:1314881:1321904132190413232321329Bartonella clarridgeiae 73, complete genomehypothetical protein7e-51201
NC_007712:3067000:3088695308869530901461452Sodalis glossinidius str. 'morsitans', complete genomephage terminase large subunit1e-50201
NC_007712:2287053:230401023040102304804795Sodalis glossinidius str. 'morsitans', complete genomeputative phage terminase large subunit1e-50201
NC_007712:1219957:1249947124994712513171371Sodalis glossinidius str. 'morsitans', complete genomephage terminase large subunit2e-50199
NC_019907:539749:5475155475155487291215Liberibacter crescens BT-1 chromosome, complete genomePhage terminase large subunit2e-48193
NC_005956:818000:8206688206688216901023Bartonella henselae str. Houston-1, complete genomeTerminase large subunit protein9e-48191
NC_003198:1908238:1909704190970419111071404Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage protein5e-44179
NC_016845:2274500:2298653229865323000531401Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative bacteriophage protein1e-43177
NC_007712:2649940:265602526560252656747723Sodalis glossinidius str. 'morsitans', complete genomeputative phage terminase large subunit8e-41168
NC_013282:1200993:1228537122853712297661230Cronobacter turicensis, complete genomehypothetical protein5e-39162
NC_014562:983398:100732210073221008125804Pantoea vagans C9-1 chromosome, complete genomePBSX phage terminase large subunit2e-35150
NC_010554:539122:5470755470755485621488Proteus mirabilis HI4320, complete genomephage terminase large subunit4e-34145
NC_015663:4767443:4769863476986347713381476Enterobacter aerogenes KCTC 2190 chromosome, complete genomephage terminase large subunit1e-33144
NC_007712:2806500:2842271284227128435121242Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-33143
NC_013850:1887556:1912965191296519144371473Klebsiella variicola At-22 chromosome, complete genomephage terminase large subunit5e-33142
NC_012660:3116500:3136980313698031384701491Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage terminase large subunit2e-32140
NC_014306:3524980:3555982355598235574661485Erwinia billingiae Eb661, complete genomeputative phage terminase large subunit7e-32138
NC_016514:2387312:2388082238808223895511470Enterobacter cloacae EcWSU1 chromosome, complete genomephage Terminase Large Subunit3e-29129
NC_018604:2763593:2789355278935527907671413Brachyspira pilosicoli WesB complete genomephage terminase, large subunit, PBSX family1e-28127
NC_017243:3093393:3093393309339330947631371Brachyspira intermedia PWS/A chromosome, complete genomePhage terminase large subunit6e-28125
NC_012225:2247796:2266261226626122676311371Brachyspira hyodysenteriae WA1, complete genomePhage terminase large subunit3e-27123
NC_012918:1174412:1182621118262111841351515Geobacter sp. M21 chromosome, complete genomeDNA packaging protein GP17 (terminase)5e-27122
NC_018604:2763593:2765882276588227673301449Brachyspira pilosicoli WesB complete genomePhage terminase large subunit2e-25117
NC_014910:1708045:1733020173302017346271608Alicycliphilus denitrificans BC chromosome, complete genometerminase large subunit protein1e-24114
NC_014923:3968000:3968986396898639704101425Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehypothetical protein5e-21102
NC_012471:2080902:2087954208795420892311278Streptococcus equi subsp. equi 4047, complete genomephage terminase, large subunit5e-2099
NC_004606:446427:4615064615064627831278Streptococcus pyogenes SSI-1, complete genomehypothetical protein5e-2099
NC_004070:1431146:1434102143410214353791278Streptococcus pyogenes MGAS315, complete genomeputative terminase large subunit - phage associated5e-2099
NC_006086:35599:5066950669519551287Streptococcus pyogenes MGAS10394, complete genomeTerminase large subunit6e-2099
NC_009332:1050353:1053309105330910545861278Streptococcus pyogenes str. Manfredo chromosome, complete genomephage terminase, large subunit8e-2098.6
NC_012471:1752483:1766248176624817674951248Streptococcus equi subsp. equi 4047, complete genomephage terminase, large subunit2e-1997.1
NC_007297:1406796:1408344140834414096211278Streptococcus pyogenes MGAS5005, complete genometerminase large subunit5e-1995.9
NC_008023:1426687:1426687142668714279731287Streptococcus pyogenes MGAS2096, complete genomeTerminase large subunit4e-1995.9
NC_008021:1401249:1402797140279714040831287Streptococcus pyogenes MGAS9429, complete genometerminase large subunit4e-1995.9
NC_011375:749693:7649567649567662331278Streptococcus pyogenes NZ131 chromosome, complete genometerminase large subunit8e-1995.1
NC_018607:135612:1403271403271424682142Brachyspira pilosicoli B2904 chromosome, complete genomephage terminase, large subunit, PBSX family9e-1788.6
NC_007795:1922000:1948782194878219500591278Staphylococcus aureus subsp. aureus NCTC 8325, complete genomephage terminase, large subunit, PBSX family8e-1582
NC_009641:1105075:1115916111591611171931278Staphylococcus aureus subsp. aureus str. Newman chromosome,phage terminase large subunit8e-1582
NC_017351:643674:6604006604006616771278Staphylococcus aureus subsp. aureus 11819-97 chromosome, completephage terminase, large subunit, PBSX family8e-1582
NC_002758:918827:9339389339389352151278Staphylococcus aureus subsp. aureus Mu50, complete genomelarge terminase8e-1582
NC_009782:920272:9353829353829366591278Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein8e-1582
NC_009641:1979053:2004935200493520062781344Staphylococcus aureus subsp. aureus str. Newman chromosome,phage terminase large subunit7e-1582
NC_006138:2288261:2288261228826122899611701Desulfotalea psychrophila LSv54, complete genomesimilar to terminase, large subunit4e-1479.7
NC_017353:887581:9035189035189047981281Staphylococcus lugdunensis N920143, complete genomephage terminase large subunit family protein4e-1376.3
NC_013893:2310495:2333731233373123350051275Staphylococcus lugdunensis HKU09-01 chromosome, complete genomePhage terminase, large subunit5e-1375.9
NC_021182:1911088:1925829192582919270701242Clostridium pasteurianum BC1, complete genomephage terminase, large subunit, PBSX family1e-1275.1
NC_011837:3272752:3272752327275232741041353Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-1170.1
NC_009706:3341250:3341250334125033426021353Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein3e-1170.1
NC_014376:1472304:1492139149213914934251287Clostridium saccharolyticum WM1 chromosome, complete genomephage terminase, large subunit, PBSX family5e-1169.3
NC_006322:1415863:1441214144121414424911278Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-1067
NC_006270:1415001:1440355144035514416291275Bacillus licheniformis ATCC 14580, complete genomePhage terminase, large subunit2e-1067
NC_014328:3434478:3454202345420234554341233Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative phage terminaselarge subunit6e-0858.9
NC_014976:627935:6732386732386745331296Bacillus subtilis BSn5 chromosome, complete genomeputative phage-related terminase large subunit6e-0858.9
NC_000964:2670288:2687532268753226888271296Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-0758.5
NC_015144:237467:2544482544482557881341Weeksella virosa DSM 16922 chromosome, complete genomephage terminase, large subunit, PBSX family2e-0757
NC_016935:6464201:6474500647450064757831284Paenibacillus mucilaginosus 3016 chromosome, complete genomepbsx family phage terminase large subunit1e-0654.7
NC_009848:2755874:2774509277450927758221314Bacillus pumilus SAFR-032, complete genometerminase large subunit2e-0653.9
UCMB5137:861734:8625318625318638291299Bacillus atrophaeus UCMB-5137PBSX defective prophage terminase (large subunit)2e-0653.9